| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2010 |
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| Symbol | lolC |
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| ID | 6144115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 2029884 |
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| End bp | 2031083 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641616886 |
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| Product | outer membrane-specific lipoprotein transporter subunit LolC |
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| Protein accession | YP_001744062 |
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| Protein GI | 170683814 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.366068 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.0307144 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACCAAC CTGTCGCTCT ATTTATTGGC CTGCGTTACA TGCGTGGGCG TGCAGCGGAT
CGCTTCGGTC GTTTCGTCTC CTGGCTTTCT ACCATCGGCA TTACCCTCGG GGTGATGGCG
CTGGTCACAG TATTGTCAGT GATGAACGGC TTTGAGCGCG AGCTGCAAAA CAACATCCTT
GGCCTGATGC CACAGGCAAT TCTCTCTTCT GAGCATGGCT CTCTTAACCC GCAGCAACTC
CCGGAAACGG CAGTCAAACT GGACGGCGTT AATCGCGTCG CACCTATTAC TACCGGTGAT
GTGGTACTGC AAAGCGCGCG CAGCGTGGCG GTCGGGGTGA TGCTGGGTAT CGACCCGGCG
CAAAAAGATC CACTAACGCC GTATCTGGTC AATGTGAAAC AAACTGACCT CGAGCCGGGG
AAATATAATG TCATCCTCGG TGAACAGCTT GCCTCACAGT TGGGCGTCAA TCGCGGTGAT
CAAATCCGCG TGATGGTGCC ATCTGCCAGC CAGTTCACGC CGATGGGGCG TATTCCAAGC
CAGCGCCTGT TCAATGTGAT TGGCACTTTC GCCGCCAACA GTGAAGTCGA TGGCTATGAA
ATGCTGGTGA ATATTGAGGA TGCCTCGCGT CTGATGCGTT ATCCGGCAGG CAATATTACC
GGCTGGCGTT TGTGGCTGGA TGAGCCGCTG AAAGTCGACT CATTAAGTCA GCAAAAACTG
CCTGAAGGCA GCAAATGGCA GGACTGGCGT GACCGTAAAG GCGAGCTTTT CCAGGCCGTA
CGCATGGAAA AAAATATGAT GGGCTTACTG CTGAGCCTGA TTGTCGCCGT TGCGGCGTTT
AACATTATTA CCTCGCTAGG GCTGATGGTG ATGGAGAAGC AGGGCGAAGT AGCGATCCTG
CAAACGCAAG GCTTAACTCC GCGACAAATC ATGATGGTCT TTATGGTGCA AGGGGCCAGC
GCTGGGATTA TCGGTGCGAT CCTCGGAGCG GCGCTTGGCG CACTGCTTGC CAGCCAGTTG
AATAATCTGA TGCCGATAAT CGGCGTCCTG CTTGATGGCG CGGCGCTGCC GGTCGCTATC
GAACCTTTAC AGGTCATTGT TATTGCGCTG GTGGCGATGG CTATCGCGCT GCTGTCTACG
CTTTACCCTT CATGGCGCGC TGCCGCCACT CAACCCGCTG AGGCTTTACG TTATGAATAA
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| Protein sequence | MYQPVALFIG LRYMRGRAAD RFGRFVSWLS TIGITLGVMA LVTVLSVMNG FERELQNNIL
GLMPQAILSS EHGSLNPQQL PETAVKLDGV NRVAPITTGD VVLQSARSVA VGVMLGIDPA
QKDPLTPYLV NVKQTDLEPG KYNVILGEQL ASQLGVNRGD QIRVMVPSAS QFTPMGRIPS
QRLFNVIGTF AANSEVDGYE MLVNIEDASR LMRYPAGNIT GWRLWLDEPL KVDSLSQQKL
PEGSKWQDWR DRKGELFQAV RMEKNMMGLL LSLIVAVAAF NIITSLGLMV MEKQGEVAIL
QTQGLTPRQI MMVFMVQGAS AGIIGAILGA ALGALLASQL NNLMPIIGVL LDGAALPVAI
EPLQVIVIAL VAMAIALLST LYPSWRAAAT QPAEALRYE
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