Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_2008 |
Symbol | lolE |
ID | 6146219 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 2027946 |
End bp | 2029190 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641616884 |
Product | outer membrane-specific lipoprotein transporter subunit LolE |
Protein accession | YP_001744060 |
Protein GI | 170682380 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family [TIGR02213] lipoprotein releasing system, transmembrane protein LolE |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 0.0630458 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGATGC CTTTATCGTT ATTAATTGGC CTGCGTTTTA GTCGCGGACG GCGGCGCGGC GGCATGGTGT CGCTGATCTC CGTCATTTCT ACCATCGGCA TTGCCCTCGG CGTGGCGGTA TTGATCGTCG GCTTAAGCGC GATGAACGGC TTTGAACGCG AACTGAATAA CCGCATTCTG GCGGTGGTGC CGCATGGTGA AATCGAAGCG GTGGATCAGC CGTGGACTAA CTGGCAGGAA GCACTGGATA ACGTGCAGAA AGTGCCGGGT ATTGCCGCCG CTGCGCCGTA TATCAATTTC ACCGGGCTGG TGGAAAGTGG CGCGAATCTG CGCGCAATCC AGGTGAAGGG CGTTAACCCG CAACAGGAAC AGCGTCTGAG CGCATTACCC TCGTTTGTTC AGGGGGATGC CTGGCGCAAT TTTAAAGCGG GCGAACAGCA AATTATCATC GGCAAAGGCG TGGCGGATGC GCTGAAAGTG AAGCAGGGCG ATTGGGTGTC GATTATGATC CCCAACTCGA ATCCTGAGCA TAAACTGATG CAGCCAAAAC GTGTGCGTTT GCACGTTGCC GGTATTTTGC AGTTGAGTGG TCAACTCGAT CACAGTTTTG CCATGATCCC GCTGGCGGAT GCCCAACAAT ATCTTGATAT GGGTTCCAGC GTGTCAGGTA TTGCCCTTAA AATGACGGAT GTTTTCAACG CCAATAAGCT GGTACGCGAT GCGGGTGAAG TGACCAACAG CTATGTTTAT ATTAAAAGCT GGATTGGTAC TTACGGCTAT ATGTATCGCG ATATCCAGAT GATCCGCGCC ATTATGTATC TGGCGATGGT ACTGGTGATT GGCGTGGCCT GTTTCAACAT CGTCTCCACC TTAGTGATGG CGGTGAAAGA CAAGAGTGGC GATATCGCAG TATTAAGAAC GCTGGGGGCG AAAGATGGTT TAATTCGCGC CATCTTTGTC TGGTATGGAT TGCTGGCAGG GCTGTTCGGC AGCCTGTGTG GGGTGATTAT CGGCGTAGTG GTTTCACTGC AACTTACCCC GATTATTGAG TGGATTGAAA AGCTGATCGG TCATCAGTTC CTCTCCAGCG ATATCTATTT TATTGACTTC TTGCCATCGG AATTGCACTG GCTGGACGTC TTCTACGTAC TGGTCACAGC ATTGTTGCTG AGTCTTTTGG CAAGTTGGTA TCCGGCGCGG CGCGCCAGTA ATATTGACCC TGCGCGAGTC CTTAGCGGCC AGTAA
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Protein sequence | MAMPLSLLIG LRFSRGRRRG GMVSLISVIS TIGIALGVAV LIVGLSAMNG FERELNNRIL AVVPHGEIEA VDQPWTNWQE ALDNVQKVPG IAAAAPYINF TGLVESGANL RAIQVKGVNP QQEQRLSALP SFVQGDAWRN FKAGEQQIII GKGVADALKV KQGDWVSIMI PNSNPEHKLM QPKRVRLHVA GILQLSGQLD HSFAMIPLAD AQQYLDMGSS VSGIALKMTD VFNANKLVRD AGEVTNSYVY IKSWIGTYGY MYRDIQMIRA IMYLAMVLVI GVACFNIVST LVMAVKDKSG DIAVLRTLGA KDGLIRAIFV WYGLLAGLFG SLCGVIIGVV VSLQLTPIIE WIEKLIGHQF LSSDIYFIDF LPSELHWLDV FYVLVTALLL SLLASWYPAR RASNIDPARV LSGQ
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