| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_2003 |
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| Symbol | potD |
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| ID | 6144835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 2023681 |
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| End bp | 2024727 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641616879 |
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| Product | spermidine/putrescine ABC transporter periplasmic substrate-binding protein |
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| Protein accession | YP_001744055 |
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| Protein GI | 170680447 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.59191 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAT GGTCACGCCA CCTGCTCGCG GCGGGTGCTC TGGCACTGGG CATGAGCGCC
GCTCACGCCG ATGACAACAA CACGCTGTAT TTCTACAACT GGACCGAGTA CGTGCCGCCA
GGACTGCTTG AACAGTTCAC CAAAGAAACC GGTATTAAGG TTATCTATTC GACTTACGAG
TCGAACGAAA CCATGTACGC GAAGCTGAAA ACGTACAAAG ACGGTGCCTA TGACCTGGTG
GTTCCTTCAA CCTATTACGT CGATAAAATG CGTAAAGAAG GGATGATCCA GAAGATCGAC
AAGTCGAAGT TAAGCAATTT CAGCAACCTC GATCCAGACA TGCTCAACAA GCCGTTTGAC
CCGAATAACG ACTACTCCAT TCCGTATATC TGGGGTGCGA CGGCGATTGG CGTTAACGGT
GATGCGGTGG ATCCGAAATC TGTCACCAGC TGGGCCGATC TGTGGAAACC TGAGTACAAA
GGCAGCCTGC TGCTGACCGA CGATGCCCGT GAAGTGTTCC AGATGGCGCT GCGCAAACTG
GGCTACTCCG GTAACACTAC CGATCCGAAA GAGATTGAAG CTGCATATAA CGAGCTGAAA
AAACTGATGC CAAACGTCGC AGCGTTTAAC TCCGATAACC CGGCTAACCC GTACATGGAA
GGCGAAGTTA ACCTCGGCAT GATCTGGAAC GGTTCTGCTT TCGTTGCACG GCAGGCGGGT
ACGCCAATTG ACGTGGTGTG GCCGAAAGAA GGCGGCATTT TCTGGATGGA CAGCCTGGCG
ATCCCGGCAA ATGCCAAAAA CAAAGAAGGT GCGCTGAAAT TGATCAACTT CCTGCTGCGC
CCCGATGTGG CAAAACAGGT TGCTGAAACT ATCGGTTATC CAACGCCAAA CCTTGCGGCG
CGTAAGCTGT TAAGTCCTGA AGTGGCGAAC GACAAAACGC TCTACCCGGA TGCTGAAACC
ATTAAAAATG GTGAATGGCA GAATGACGTT GGCGCAGCCA GCAGCATTTA TGAAGAGTAT
TATCAGAAGC TGAAAGCAGG ACGTTAA
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| Protein sequence | MKKWSRHLLA AGALALGMSA AHADDNNTLY FYNWTEYVPP GLLEQFTKET GIKVIYSTYE
SNETMYAKLK TYKDGAYDLV VPSTYYVDKM RKEGMIQKID KSKLSNFSNL DPDMLNKPFD
PNNDYSIPYI WGATAIGVNG DAVDPKSVTS WADLWKPEYK GSLLLTDDAR EVFQMALRKL
GYSGNTTDPK EIEAAYNELK KLMPNVAAFN SDNPANPYME GEVNLGMIWN GSAFVARQAG
TPIDVVWPKE GGIFWMDSLA IPANAKNKEG ALKLINFLLR PDVAKQVAET IGYPTPNLAA
RKLLSPEVAN DKTLYPDAET IKNGEWQNDV GAASSIYEEY YQKLKAGR
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