Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1990 |
Symbol | rluE |
ID | 6144116 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 2011589 |
End bp | 2012212 |
Gene Length | 624 bp |
Protein Length | 207 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641616866 |
Product | 23S rRNA pseudouridine synthase E |
Protein accession | YP_001744042 |
Protein GI | 170681779 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.82324 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAAAA CTTCTTTTAG AAATCACCAG GTTAAGCGAT TCAGCTCGCA ACGTTCTACC AGGCGTAAAC CTGAAAACCA GCCCACGCGT GTGATCCTGT TCAATAAACC CTACGATGTT CTTCCGCAGT TCACCGATGA AGCCGGACGC AAAACATTAA AAGAATTCAT CCCGGTTCAG GGCGTTTATG CAGCAGGTCG TCTTGACCGC GATAGCGAAG GGTTACTGGT GCTGACCAAT AACGGTGCGT TGCAGGCGCG TTTAACCCAG CCGGGTAAAC GCACCGGGAA AATCTATTAT GTGCAGGTGG AAGGTATTCC CACACAAGAC GCACTTGAGG CCTTGCGCAA TGGCGTGACC TTAAATGATG GCCCTACCCT GCCCGCAGGC GTGGACCTGG TTGAAGAGCC GGAGTGGTTA TGGCCGCGTA ATCCGCCGAT TCGTGAACGT AAAAGTATTC CCACCAGCTG GCTGAAGATT ACTTTATATG AAGGACGTAA TCGCCAGGTG CGCCGCATGA CCGCCCATGT TGGTTTCCCC ACGCTGCGAC TGATTCGCTA TGCGATGGGT GATTACTCTT TGGATAATCT TGCCAACGGC GAATGGCGAG AAGCGACAGA TTAA
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Protein sequence | MQKTSFRNHQ VKRFSSQRST RRKPENQPTR VILFNKPYDV LPQFTDEAGR KTLKEFIPVQ GVYAAGRLDR DSEGLLVLTN NGALQARLTQ PGKRTGKIYY VQVEGIPTQD ALEALRNGVT LNDGPTLPAG VDLVEEPEWL WPRNPPIRER KSIPTSWLKI TLYEGRNRQV RRMTAHVGFP TLRLIRYAMG DYSLDNLANG EWREATD
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