Gene EcSMS35_1990 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_1990 
SymbolrluE 
ID6144116 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp2011589 
End bp2012212 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content52% 
IMG OID641616866 
Product23S rRNA pseudouridine synthase E 
Protein accessionYP_001744042 
Protein GI170681779 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.82324 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAAAA CTTCTTTTAG AAATCACCAG GTTAAGCGAT TCAGCTCGCA ACGTTCTACC 
AGGCGTAAAC CTGAAAACCA GCCCACGCGT GTGATCCTGT TCAATAAACC CTACGATGTT
CTTCCGCAGT TCACCGATGA AGCCGGACGC AAAACATTAA AAGAATTCAT CCCGGTTCAG
GGCGTTTATG CAGCAGGTCG TCTTGACCGC GATAGCGAAG GGTTACTGGT GCTGACCAAT
AACGGTGCGT TGCAGGCGCG TTTAACCCAG CCGGGTAAAC GCACCGGGAA AATCTATTAT
GTGCAGGTGG AAGGTATTCC CACACAAGAC GCACTTGAGG CCTTGCGCAA TGGCGTGACC
TTAAATGATG GCCCTACCCT GCCCGCAGGC GTGGACCTGG TTGAAGAGCC GGAGTGGTTA
TGGCCGCGTA ATCCGCCGAT TCGTGAACGT AAAAGTATTC CCACCAGCTG GCTGAAGATT
ACTTTATATG AAGGACGTAA TCGCCAGGTG CGCCGCATGA CCGCCCATGT TGGTTTCCCC
ACGCTGCGAC TGATTCGCTA TGCGATGGGT GATTACTCTT TGGATAATCT TGCCAACGGC
GAATGGCGAG AAGCGACAGA TTAA
 
Protein sequence
MQKTSFRNHQ VKRFSSQRST RRKPENQPTR VILFNKPYDV LPQFTDEAGR KTLKEFIPVQ 
GVYAAGRLDR DSEGLLVLTN NGALQARLTQ PGKRTGKIYY VQVEGIPTQD ALEALRNGVT
LNDGPTLPAG VDLVEEPEWL WPRNPPIRER KSIPTSWLKI TLYEGRNRQV RRMTAHVGFP
TLRLIRYAMG DYSLDNLANG EWREATD