| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1960 |
|---|
| Symbol | dadA |
|---|
| ID | 6145986 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 1982843 |
|---|
| End bp | 1984147 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641616836 |
|---|
| Product | D-amino acid dehydrogenase small subunit |
|---|
| Protein accession | YP_001744012 |
|---|
| Protein GI | 170681298 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00842903 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 0.752905 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCTATGC GAGTTGTCAT ACTGGGAAGT GGTGTGGTAG GCGTTGCCAG CGCCTGGTAC
TTAAATCAGG CAGGACATGA GGTCACCGTC ATTGATCGGG AGCCGGGGGC CGCCCTGGAA
ACCAGTGCCG CGAATGCCGG GCAAATCTCC CCCGGATATG CAGCACCGTG GGCGGCACCA
GGTGTGCCTT TAAAAGCGAT TAAATGGATG TTCCAGCGCC ATGCGCCGCT GGCGGTTCGT
CTCGACGGTA CGCAGTTCCA GTTGAAATGG ATGTGGCAAA TGTTACGTAA CTGCGACACC
AGCCACTACA TGGAAAACAA AGGGCGGATG GTGCGTCTGG CGGAATACAG CCGTGATTGC
CTGAAAGCAT TGCGCGCCGA AACCAATATT CAGTATGAAG GGCGTCAGGG TGGGACGCTG
CAACTGTTCC GTACCGAACA ACAGTATGAA AATGCGACCC GCGATATCGC CGTGCTGGAA
GATGCCGGCG TACCGTACCA GCTGCTGGAA TCCAGCCGTC TGGCGGAAGT GGAGCCCGCG
CTGGCAGAAG TGGCGCACAA ACTGACGGGG GGGCTCCAGC TGCCCAATGA TGAAACCGGA
GACTGCCAGC TGTTTACCCA GAATCTGGCG CGGATGGCGG AGCAGGCGGG GGTTAAATTC
CGCTTTAATA CGCCCGTTGA CCAACTACTT TGCGACGGCG AGCAAATCTA CGGCGTGAAG
TGTGGCGATG AAGTGATTAA GGCCGATGCA TATGTGATGG CATTTGGTTC TTACTCGACG
GCGATGCTCA AAGGCATTGT TGATATTCCG GTGTATCCGC TGAAAGGCTA CTCGCTGACT
ATTCCGATTG CACAGGAAGA TGGTGCGCCG GTGTCTACCA TCCTTGATGA AACCTACAAA
ATCGCCATTA CCCGTTTCGA TAACCGCATT CGTGTTGGTG GAATGGCGGA AATTGTTGGC
TTTAATACCG AGCTGTTGCA ACCGCGTCGT GAAACGCTGG AGATGGTGGT TCGCGATCTC
TATCCACGCG GCGGTCATGT CGAGCAGGCG ACTTTCTGGA CTGGTCTGCG CCCGATGACG
CCAGACGGCA CGCCGGTTGT CGGGCGTACA CGCTTTAAAA ATCTGTGGCT GAATACCGGT
CACGGCACGC TCGGCTGGAC GATGGCTTGC GGTTCCGGTC AGTTGTTAAG CGATCTGCTC
TCTGGTCGCA CGCCAGCGAT CCCGTATGAA GATCTAAGCG TAGCGCGCTA CAGCCGTGGA
TTTACGCCAT CACGCCCGGG CCATTTACAT GGCGCACACA GCTAA
|
|---|
| Protein sequence | MAMRVVILGS GVVGVASAWY LNQAGHEVTV IDREPGAALE TSAANAGQIS PGYAAPWAAP
GVPLKAIKWM FQRHAPLAVR LDGTQFQLKW MWQMLRNCDT SHYMENKGRM VRLAEYSRDC
LKALRAETNI QYEGRQGGTL QLFRTEQQYE NATRDIAVLE DAGVPYQLLE SSRLAEVEPA
LAEVAHKLTG GLQLPNDETG DCQLFTQNLA RMAEQAGVKF RFNTPVDQLL CDGEQIYGVK
CGDEVIKADA YVMAFGSYST AMLKGIVDIP VYPLKGYSLT IPIAQEDGAP VSTILDETYK
IAITRFDNRI RVGGMAEIVG FNTELLQPRR ETLEMVVRDL YPRGGHVEQA TFWTGLRPMT
PDGTPVVGRT RFKNLWLNTG HGTLGWTMAC GSGQLLSDLL SGRTPAIPYE DLSVARYSRG
FTPSRPGHLH GAHS
|
|---|
| |