Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1880 |
Symbol | tonB |
ID | 6145010 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 1902601 |
End bp | 1903332 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641616756 |
Product | transport protein TonB |
Protein accession | YP_001743934 |
Protein GI | 170681605 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.000508248 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTATGA CTTCAATGAC CCTTGATTTA CCTCGCCGCT TCCCCTGGCC GACGTTACTT TCGGTCTGCA TTCATGGTGC TGTTGTGGCG GGTTTGATCT ATACCTCGGT ACATCAGGTT ATTGAACTAC CTGCGCCCGC GCAGCCGATT TCTGTCACGA TGGTTGCGCC AGCGGATCTC GAACCGCCAC AAGCCGTTCA ACCACCACCG GAGCCGGTGG TAGAGCCAGA ACCGGAACCT GAGCCGATCC CTGAACCGCC AAAAGAAGCT CCGGTGGTCA TTGAAAAGCC GAAGCCGAAA CCTAAGCCAA AACCGAAGCC GGTGAAAAAG GTGGAGCAGC CAAAACGCGA TGTCAAACCC GTAGAGTCGC GTCCGGCATC ACCGTTTGAA AATACGGCAC CCGCGCGCCC GACATCAAGT ACGGCAACGG CTGCAACCAG CAAGCCGGTT ACCAGTGTGG CTTCAGGACC ACGCGCATTA AGCCGTAATC AGCCGCAGTA TCCGGCACGA GCACAGGCAT TGCGCATTGA AGGGCAGGTT AAAGTTAAAT TTGATGTCAC GCCAGATGGT CGCGTGGATA ACGTACAAAT CCTCTCAGCC AAGCCTGCGA ACATGTTTGA GCGTGAAGTG AAAAATGCGA TGCGCAGATG GCGTTATGAG CCGGGTAAGC CAGGCAGTGG GATTGTGGTG AATATCCTGT TTAAAATTAA CGGCACTACC GAAATTCAGT AA
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Protein sequence | MIMTSMTLDL PRRFPWPTLL SVCIHGAVVA GLIYTSVHQV IELPAPAQPI SVTMVAPADL EPPQAVQPPP EPVVEPEPEP EPIPEPPKEA PVVIEKPKPK PKPKPKPVKK VEQPKRDVKP VESRPASPFE NTAPARPTSS TATAATSKPV TSVASGPRAL SRNQPQYPAR AQALRIEGQV KVKFDVTPDG RVDNVQILSA KPANMFEREV KNAMRRWRYE PGKPGSGIVV NILFKINGTT EIQ
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