| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1842 |
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| Symbol | |
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| ID | 6145922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 1866223 |
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| End bp | 1868208 |
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| Gene Length | 1986 bp |
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| Protein Length | 661 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641616718 |
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| Product | RNase II stability modulator |
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| Protein accession | YP_001743896 |
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| Protein GI | 170681077 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0112439 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000000000000244061 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAAAACCG TTAGGGAGTC CACAACGTTG TACAACTTTC TCGGATCGCA CAATCCATAC
TGGCGGTTAA CGGAAAGCAG CGATGTTTTG CGCTTTTCTA CCACCGAAAC CACAGAACCT
GAACGTACGT TGCAGTTATC TGCCGAACAG GCTGCTCGCA TCAGGGAAAT GACGGTCATC
ACCTCCAGCC TGATGATGAG TCTGACCGTC GATGAAAGCG ATCTTTCTGT GCATCTGGTA
GGACGAAAAA TCAATAAACG GGAATGGGCT GGCAACGCGT CTGCATGGCA TGACACACCA
GCAGTTGCTC GTGATTTATC ACACGGGCTT TCCTTTGCTG AGCAGGTAGT TTCTGAAGCA
CATTCCGCAA TAGTGATTCT CGACAGCCGG GGGAATATCC AACGCTTCAA TCGGTTATGT
GAAGATTACA CTGGGTTGAA AGAACACGAC GTCATTGGCC AAAGCGTGTT TAAACTGTTT
ATGAGCCGTC GTGAAGCTGC GGCATCCAGG CGCAATAACC GTGTATTTTT TCGAAGCGGC
AATGCATATG AAGTCGAACT GTGGATACCA ACACGTAAAG GCCAGCGGCT GTTTCTGTTT
CGCAATAAAT TTGTCCACAG CGGCAGTGGC AAAAACGAGA TTTTTTTAAT CTGTTCCGGC
ACCGACATTA CCGAAGAGCG CCGCGCTCAG GAGCGACTGC GTATTCTGGC AAATACCGAC
AGTATCACCG GACTGCCGAA TCGTAATGCA ATGCAGGAGT TAATCGATCA CGCTATTAAT
CAGGCAGATA ACAATAAAGT TGGGGTTGTG TATCTTGATT TGGATAATTT TAAAAAGGTC
AACGACGCCT ATGGGCATTT ATTTGGTGAC CAGTTATTAC GCGACGTGTC ATTGGCCATT
TTAAGCTGTC TCGAACATGA TCAGGTGTTG GCGCGTCCAG GTGGCGATGA GTTTCTGGTA
CTGGCATCCA ATACCTCACA AAGCGCGCTG GAAGCAATGG CATCACGAAT TTTGACCCGC
TTACGACTCC CCTTCCGCAT TGGTTTAATT GAAGTTTATA CCAGCTGTTC AGTAGGTATT
TCACTCTCTC CCGAACATGG TTCGGACAGC GCGGCTATTA TTCGTCACGC CGACACAGCA
ATGTACACAG CGAAGGAAGG CGGACGAGGA CAATTTTGCG TTTTTACCCC AGAAATGAAT
CAGAGGGTAT TTGAATATCT CTGGCTGGAT ACCAACTTGC GTAAAGCACT GGAAAACGAT
CAGTTGGTTA TTCACTATCA ACCGAAAATC ACCTGGCGTG GCGAAGTGCG CAGTCTGGAA
GCACTAGTAC GTTGGCAGTC ACCTGAACGT GGGTTGATTC CACCGTTGGA CTTCATTTCC
TACGCCGAAG AGTCAGGGCT AATTGTGCCT TTAGGCCGTT GGGTGATTCT CGATGTCGTA
CGCCAGGTGG CAAAGTGGCG GGATAAAGGT ATTAACCTGC GAGTGGCGGT AAACATTTCT
GCACGTCAGC TCGCCGATCA AACCATTTTC ACCGCCCTGA AACAGGTTCT CCAGGAACTC
AATTTTGAAT ACTGCCCTAT TGATGTTGAA CTGACGGAGA GCTGCCTGAT TGAGAATGAT
GAACTGGCAC TGTCTGTTAT TCAACAATTT AGCCAACTAG GTGCGCAAGT GCATCTGGAC
GATTTTGGTA CCGGCTACTC TTCACTTTCG CAACTGGCGC GCTTTCCGAT CGATGCCATC
AAACTTGACC AGGTTTTTGT TCGGGATATT CACAAACAGC CTGTCTCGCA GTCACTGGTC
CGGGCGATCG TCGCTGTGGC ACAGGCATTG AATCTTCAGG TGATCGCTGA AGGAGTGGAG
AGTAAAAAGG AAGATGCTTT TTTAACCAAG AACGGGATCA ATGAGCGGCA AGGATTTTTG
TTTGCCAAAC CGATGCCCGC CGTCGCCTTC GAACGCTGGT ATAAACGCTA TCTGAAGCGC
GCATAA
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| Protein sequence | MKTVRESTTL YNFLGSHNPY WRLTESSDVL RFSTTETTEP ERTLQLSAEQ AARIREMTVI
TSSLMMSLTV DESDLSVHLV GRKINKREWA GNASAWHDTP AVARDLSHGL SFAEQVVSEA
HSAIVILDSR GNIQRFNRLC EDYTGLKEHD VIGQSVFKLF MSRREAAASR RNNRVFFRSG
NAYEVELWIP TRKGQRLFLF RNKFVHSGSG KNEIFLICSG TDITEERRAQ ERLRILANTD
SITGLPNRNA MQELIDHAIN QADNNKVGVV YLDLDNFKKV NDAYGHLFGD QLLRDVSLAI
LSCLEHDQVL ARPGGDEFLV LASNTSQSAL EAMASRILTR LRLPFRIGLI EVYTSCSVGI
SLSPEHGSDS AAIIRHADTA MYTAKEGGRG QFCVFTPEMN QRVFEYLWLD TNLRKALEND
QLVIHYQPKI TWRGEVRSLE ALVRWQSPER GLIPPLDFIS YAEESGLIVP LGRWVILDVV
RQVAKWRDKG INLRVAVNIS ARQLADQTIF TALKQVLQEL NFEYCPIDVE LTESCLIEND
ELALSVIQQF SQLGAQVHLD DFGTGYSSLS QLARFPIDAI KLDQVFVRDI HKQPVSQSLV
RAIVAVAQAL NLQVIAEGVE SKKEDAFLTK NGINERQGFL FAKPMPAVAF ERWYKRYLKR
A
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