| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1831 |
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| Symbol | sapD |
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| ID | 6143579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 1852107 |
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| End bp | 1853099 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641616707 |
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| Product | peptide ABC transporter, ATP-binding protein SapD |
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| Protein accession | YP_001743885 |
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| Protein GI | 170679617 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG4170] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.000565495 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCATTAC TCGATATTCG TAACCTGACC ATTGAATTTA AAACCGGTGA TGAGTGGGTT
AAAGCCGTCG ACCGCGTAAG TATGACCTTA ACCGAAGGTG AAATCCGCGG TCTTGTTGGC
GAATCAGGTT CCGGCAAAAG TTTGATTGCG AAAGCAATTT GTGGGGTGAA TAAAGATAAC
TGGCGTGTTA CTGCTGACCG TATGCGTTTT GATGATATCG ATTTGCTGCG TCTCTCCGCA
CGCGAACGGC GCAAGCTGGT TGGTCACAAC GTGTCGATGA TTTTCCAGGA ACCGCAGTCG
TGTCTTGACC CTTCAGAACG TGTGGGTCGC CAGTTGATGC AAAACATCCC AGCCTGGACC
TATAAAGGCC GTTGGTGGCA GCGTTTTGGC TGGCGCAAAC GCCGTGCCAT TGAACTGCTG
CACCGCGTGG GGATTAAAGA TCACAAAGAT GCGATGCGCA GTTTTCCCTA TGAGTTGACC
GAAGGTGAAT GTCAGAAAGT GATGATAGCC ATTGCACTGG CGAATCAACC GCGTCTGCTG
ATTGCTGACG AACCGACAAA CTCAATGGAG CCAACAACCC AGGCGCAAAT CTTTCGCCTG
CTGACGCGTC TCAACCAAAA CAGTAATACC ACTATTTTGC TTATCAGCCA TGACTTACAA
ATGCTTAGCC AATGGGCGGA TAAAATTAAC GTGCTTTACT GCGGTCAAAC GGTGGAAACC
GCGCCAAGTA AGGAGTTGGT GACAATGCCA CATCATCCTT ATACCCAGGC GCTGATCCGC
GCGATACCAG ACTTCGGCAG CGCGATGCCG CATAAAAGTC GCCTCAATAC GCTGCCCGGC
GCTATCCCGC TGCTGGAACA GTTACCGATT GGGTGTCGTC TGGGGCCGCG TTGCCCGTAT
GCACAACGAG AATGCATTGT GACGCCACGT TTGACGGGGG CGAAAAATCA TCTCTATGCC
TGTCATTTCC CGCTGAACAT GGAGAAAGAA TGA
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| Protein sequence | MPLLDIRNLT IEFKTGDEWV KAVDRVSMTL TEGEIRGLVG ESGSGKSLIA KAICGVNKDN
WRVTADRMRF DDIDLLRLSA RERRKLVGHN VSMIFQEPQS CLDPSERVGR QLMQNIPAWT
YKGRWWQRFG WRKRRAIELL HRVGIKDHKD AMRSFPYELT EGECQKVMIA IALANQPRLL
IADEPTNSME PTTQAQIFRL LTRLNQNSNT TILLISHDLQ MLSQWADKIN VLYCGQTVET
APSKELVTMP HHPYTQALIR AIPDFGSAMP HKSRLNTLPG AIPLLEQLPI GCRLGPRCPY
AQRECIVTPR LTGAKNHLYA CHFPLNMEKE
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