| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1830 |
|---|
| Symbol | sapC |
|---|
| ID | 6147464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 1851217 |
|---|
| End bp | 1852107 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641616706 |
|---|
| Product | peptide ABC transporter, permease protein SapC |
|---|
| Protein accession | YP_001743884 |
|---|
| Protein GI | 170684277 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG4171] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.000510881 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCTTACG ATAGCGTATA CAGCGAAAAG CGCCCGCCGG GCACGCTGCG TACCGCCTGG
CGCAAATTTT ATAGTGACGC CTCTGCGATG GTCGGCCTGT ACGGCTGCGC GGGGCTGGCT
GTACTGTGTA TTTTTGGCGG CTGGTTTGCG CCTTACGGCA TCGATCAGCA ATTTCTCGGT
TATCAATTAT TGCCGCCGTC ATGGTCGCGC TATGGCGAAG TTTCTTTCTT CCTTGGGACT
GACGACCTCG GACGCGATGT TTTAAGCCGT TTACTGAGCG GAGCTGCGCC AACCGTAGGC
GGCGCATTTG TGGTGACGCT TGCCGCGACG ATCTGTGGCC TGGTACTGGG CACCTTCGCC
GGGGCGACCC ACGGCCTCCG ATCAGCGGTG CTTAACCATA TTCTGGATAC CTTACTGGCG
ATCCCTTCCC TACTGCTGGC AATTATCGTT GTAGCGTTTG CCGGACCGAG TTTGTCGCAC
GCCATGTTTG CCGTCTGGCT GGCGCTGCTG CCTCGTATGG TACGTTCGAT TTACAGCATG
GTGCATGACG AACTGGAAAA AGAGTACGTT ATCGCCGCCC GTCTGGATGG CGCATCAACG
CTGAATATTC TCTGGTTTGC TGTGATGCCA AACATCACCG CCGGGCTGGT CACCGAGATC
ACCCGCGCAC TGTCGATGGC AATTCTCGAT ATCGCCGCGC TGGGCTTTCT CGATCTCGGC
GCACAACTCC CCTCGCCTGA ATGGGGAGCG ATGCTCGGTG ATGCGCTGGA ACTGATTTAT
GTCGCCCCGT GGACTGTCAT GCTGCCAGGT GCGGCAATTA TGATTAGCGT GCTGTTGGTT
AACCTCCTTG GCGACGGTGT CCGTCGTGCA ATTATTGCGG GGGTGGAATA A
|
|---|
| Protein sequence | MPYDSVYSEK RPPGTLRTAW RKFYSDASAM VGLYGCAGLA VLCIFGGWFA PYGIDQQFLG
YQLLPPSWSR YGEVSFFLGT DDLGRDVLSR LLSGAAPTVG GAFVVTLAAT ICGLVLGTFA
GATHGLRSAV LNHILDTLLA IPSLLLAIIV VAFAGPSLSH AMFAVWLALL PRMVRSIYSM
VHDELEKEYV IAARLDGAST LNILWFAVMP NITAGLVTEI TRALSMAILD IAALGFLDLG
AQLPSPEWGA MLGDALELIY VAPWTVMLPG AAIMISVLLV NLLGDGVRRA IIAGVE
|
|---|
| |