Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1819 |
Symbol | pspF |
ID | 6145159 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 1837937 |
End bp | 1838914 |
Gene Length | 978 bp |
Protein Length | 325 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641616695 |
Product | phage shock protein operon transcriptional activator |
Protein accession | YP_001743873 |
Protein GI | 170684159 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG1221] Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain |
TIGRFAM ID | [TIGR02974] psp operon transcriptional activator PspF |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 0.235357 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGAAT ACAAAGATAA TTTACTTGGT GAGGCGAATA GCTTTCTCGA AGTGCTGGAA CAGGTTTCGC ATCTCGCACC ACTGGATAAA CCGGTGCTCA TCATCGGCGA ACGCGGCACC GGTAAAGAGT TGATTGCCAG CCGCCTGCAT TATCTCTCCT CCCGTTGGCA AGGGCCGTTT ATTTCCCTTA ACTGCGCGGC GTTAAATGAA AATCTGCTGG ATTCCGAACT GTTTGGTCAC GAAGCGGGGG CGTTTACCGG TGCGCAAAAA CGTCATCCTG GGAGATTTGA ACGTGCCGAT GGCGGTACGC TATTTCTTGA TGAACTCGCT ACGGCACCGA TGATGGTGCA GGAAAAATTA TTGCGTGTGA TTGAGTACGG TGAACTGGAG CGCGTTGGCG GTAGTCAGCC ATTGCAGGTG AATGTGCGGT TGGTATGCGC GACGAATGCC GATCTCCCGG CGATGGTCAA TGAAGGTACT TTTCGCGCTG ACCTGCTCGA CCGGCTGGCT TTCGATGTAG TGCAACTGCC GCCCCTGCGC GAGCGCGAAA GCGACATTAT GCTGATGGCA GAACACTTTG CCATTCAGAT GTGTCGGGAA ATCAAGCTGC CTCTGTTCCC GGGTTTTACG GAGCGCGCCA GAGAAACATT GCTGAATTAT CGCTGGCCGG GAAATATTCG TGAATTGAAA AACGTGGTGG AACGTTCAGT GTATCGCCAC GGCACCAGCG ATTATCCGCT TGATGACATC ATTATTGATC CCTTTAAACG GCGTCCGCCT GAAGACGCTA TCGCCGTTTC AGAAACCACC TCGCTTCCAA CACTGCCGCT GGATTTACGT GAGTTTCAGA TGCAGCAGGA AAAAGAGTTG CTGCAACTCA GTTTGCAACA GGGGAAATAT AACCAGAAGC GCGCGGCTGA ATTACTGGGG TTAACCTATC ATCAGTTCCG CGCGTTGTTG AAAAAGCACC AGATTTAG
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Protein sequence | MAEYKDNLLG EANSFLEVLE QVSHLAPLDK PVLIIGERGT GKELIASRLH YLSSRWQGPF ISLNCAALNE NLLDSELFGH EAGAFTGAQK RHPGRFERAD GGTLFLDELA TAPMMVQEKL LRVIEYGELE RVGGSQPLQV NVRLVCATNA DLPAMVNEGT FRADLLDRLA FDVVQLPPLR ERESDIMLMA EHFAIQMCRE IKLPLFPGFT ERARETLLNY RWPGNIRELK NVVERSVYRH GTSDYPLDDI IIDPFKRRPP EDAIAVSETT SLPTLPLDLR EFQMQQEKEL LQLSLQQGKY NQKRAAELLG LTYHQFRALL KKHQI
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