Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1775 |
Symbol | ydbK |
ID | 6144308 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 1788746 |
End bp | 1792270 |
Gene Length | 3525 bp |
Protein Length | 1174 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641616651 |
Product | pyruvate-flavodoxin oxidoreductase |
Protein accession | YP_001743829 |
Protein GI | 170683269 |
COG category | [C] Energy production and conversion |
COG ID | [COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [COG1013] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [COG1014] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit |
TIGRFAM ID | [TIGR02176] pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTACTA TTGACGGTAA TGGCGCGGTT GCTTCGGTGG CGTTTCGCAC CAGTGAAGTT ATCGCCATCT ACCCTATTAC CCCCAGTTCC ACGATGGCAG AACAGGCTGA TGCCTGGGCC GGAAACGGCT TGAAGAACGT TTGGGGAGAC ACACCACGCG TGGTTGAAAT GCAGTCGGAA GCGGGTGCTA TCGCTACCGT GCATGGCGCT TTGCAGACGG GTGCCCTTTC AACATCGTTT ACGTCATCGC AGGGTTTGCT GCTGATGATC CCGACGCTGT ACAAACTGGC AGGCGAACTC ACACCGTTTG TCCTGCATGT AGCGGCACGT ACCGTTGCCA CACATGCACT CTCTATTTTT GGCGATCATT CCGACGTTAT GGCGGTGCGC CAGACGGGTT GCGCGATGTT GTGTGCGGCT AACGTCCAGG AAGCGCAAGA CTTTGCTCTC ATTTCGCACA TCGCAACGCT GAAGAGCCGC GTGCCATTTA TTCATTTCTT TGATGGTTTC CGCACGTCCC ACGAAATCAA TAAAATTGTC CCGCTGGCCG ATGACACTAT TCTTGATCTC ATGCCGCAGG CCGAAATTGA TGCTCATCGC GCCCGGGCGC TCAACCCGGA ACATCCGGTG ATCCGCGGTA CGTCCGCCAA TCCTGACACT TATTTCCAGT CTCGCGAAGC CACCAACCCC TGGTACAACG CGGTCTATGA CCATGTTGAA CAGGCGATGA ATGATTTCGC TGCCGCGACA GGTCGTCAGT ATCAGCCATT TGAGTATTAT GGGCATCCGC AAGCGGAACG GGTGATTATC CTGATGGGCT CAGCCATTGG CACCTGTGAA GAAGTGGTTG ATGAATTGCT AACCCGTGGC GAAAAAGTCG GCGTGCTGAA AGTTCGCCTG TACCGTCCCT TCTCCGCCAA ACACTTGCTA CAAGCTCTGC CGGGATCCGT ACGCAGCGTG GCGGTACTGG ACAGAACCAA AGAACCCGGT GCCCAGGCAG AACCGCTCTA TCTGGATGTG ATGACCGCAC TGGCAGAAGC CTTTAATAAT GGCGAGCGCG AAACCCTGCC CCGTGTCATT GGTGGGCGCT ATGGTCTTTC ATCCAAAGAA TTTGGCCCGG ACTGTGTACT GGCGGTATTT GCCGAGCTCA ACGCGGCTAA ACCGAAAGCG CGCTTTACGG TTGGTATTTA CGATGATGTG ACCAATCTGT CACTGCCGTT GCCGGAAAAC ACCCTGCCAA ACTCGGCGAA ACTTGAAGCC TTGTTTTATG GCCTTGGTAG TGATGGCAGC GTTTCCGCGA CCAAAAACAA TATCAAGATT ATCGGTAATT CCACGCCGTG GTACGCACAG GGCTATTTTG TTTACGACTC CAAAAAGGCG GGCGGCCTGA CGGTTTCTCA CCTTCGCGTG AGCGAGCAGC CGATTCGTTC CGCTTATCTG ATTTCCCAGG CTGATTTTGT TGGCTGCCAC CAGTTGCAGT TTATCGACAA ATATCAGATG GTTGAGCGTT TAAAACCTGG CGGCATTTTC CTGCTCAACA CGCCGTACAG CGCAGATGAA GTGTGGTCGC GCTTGCCGCA GGAAGTTCAG GCCGTGTTAA ACCAGAAAAA AGCGCGCTTC TATGTGATTA ACGCGGCGAA AATCGCCCGC GAATGTGGCC TGGCGGCCCG AATTAATACC GTCATGCAGA TGGCTTTTTT CCATCTGACG CAAATTCTGC CTGGCGATAG CGCCCTCGCA GAATTGCAGG GTGCGATTGC CAAAAGTTAC AGTAGCAAAG GTCAGGATCT GGTGGAGCGC AACTGGCAGG CTCTGGCGCT GGCACGTGAA TCCGTAGAAG AAGTTCCGCT GCAACCAGTA AATCCGCACA GCGCCAATCG ACCGCCAGTG GTTTCCGATG CCGCCCCTGA TTTCGTGAAA ACCGTAACCG CGGCGATGCT CGCCGGGCTT GGTGATGCCC TCCCCGTTTC GGCGCTGCCG CCAGACGGCA CCTGGCCGAT GGGCACCACG CGCTGGGAAA AACGCAATAT CGCCGAAGAG ATCCCCATCT GGAAAGAGGA ACTCTGTACC CAATGTAACC ACTGCGTCGC TGCTTGCCCA CACTCAGCTA TTCGCGCAAA AGTGGTACCG CCTGAAGCGA TGGAAAACGC CCCTGCCAGC CTGCATTCGC TGGATGTGAA ATCGCGTGAT ATGCGCGGGC AGAAATATGT CTTGCAGGTG GCTCCGGAAG ATTGCACCGG TTGTAACCTG TGCGTCGAAG TTTGCCCGGC GAAAGACCGT CAGAATCCAG AGATTAAAGC CATCAATATG ATGTCGCGGC TGGAACATGT CGAAGAAGAG AAAATCAATT ACGATTTCTT CCTCAACCTG CCAGAAATCG ACCGTAGCAA ACTGGAACGT ATTGATATTC GTACATCACA GCTGATTACA CCGCTGTTTG AATATTCCGG TGCTTGCTCC GGTTGTGGCG AGACGCCGTA TATTAAATTG CTGACTCAGC TCTATGGCGA TCGGATGTTG ATCGCTAACG CTACGGGTTG TTCTTCAATT TATGGTGGTA ACCTGCCCTC CACACCATAT ACCACTGATG CCAACGGTCG TGGACCGGCA TGGGCGAACT CGCTGTTTGA AGATAACGCC GAATTCGGCC TTGGTTTCCG CCTTACGGTC GATCAACACC GTGTCCGCGT GCTGCGTCTG CTGGATCAAT TTGCCGATAA AATCCCGGCG GAATTACTGA CTGCGTTGAA ATCAGACGCT ACGCCAGAGA TTCGTCGTGA ACAGGTTGCA GCTTTACGCC AGCAACTCAA CGATGTTGCC GAAGCACATG AACTGCTGCG TGACGCAGAT GCTCTGGTGG AAAAATCAAT CTGGCTGATT GGTGGCGATG GCTGGGCTTA CGATATTGGC TTTGGCGGTC TGGATCATGT ATTGAGCCTG ACGGAAAACG TCAACATTCT GGTGCTGGAT ACGCAATGCT ATTCCAACAC TGGTGGTCAG GCGTCGAAAG CGACACCGCT GGGTGCAGTA ACTAAGTTCG GCGAGCACGG CAAACGTAAA GCGCGTAAAG ATCTTGGCGT CAGTATGATG ATGTACGGTC ATGTTTATGT GGCGCAGATT TCTCTCGGCG CGCAGCTGAA CCAGACGGTG AAAGCGATTC AGGAAGCGGA AGCGTATCCG GGACCATCGC TGATCATTGC TTATAGCCCG TGTGAAGAGC ATGGTTACGA TCTGGCTCTC AGCCACGACC AGATGCGCCA ACTCACTGCT ACCGGCTTCT GGCCGCTATA TCGCTTTGAT CCACGTCGAG CCGATGAAGG CAAACTGCCG CTGGCACTGG ATTCACGCCC GCCGTCAGAA GCACTGGAAG AAACGTTACT TCATGAGCAA CGTTTCCGTC GTCTGAATTC GCAGCAGCCA GAAGTGGCAG AACAGTTATG GAAAGATGCT GCAGCTGATT TGCAAAAACG CTATGACTTC CTGGCACAAA TGGCCGGAAA AGCGGAAAAA AGCAACACCG ATTAA
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Protein sequence | MITIDGNGAV ASVAFRTSEV IAIYPITPSS TMAEQADAWA GNGLKNVWGD TPRVVEMQSE AGAIATVHGA LQTGALSTSF TSSQGLLLMI PTLYKLAGEL TPFVLHVAAR TVATHALSIF GDHSDVMAVR QTGCAMLCAA NVQEAQDFAL ISHIATLKSR VPFIHFFDGF RTSHEINKIV PLADDTILDL MPQAEIDAHR ARALNPEHPV IRGTSANPDT YFQSREATNP WYNAVYDHVE QAMNDFAAAT GRQYQPFEYY GHPQAERVII LMGSAIGTCE EVVDELLTRG EKVGVLKVRL YRPFSAKHLL QALPGSVRSV AVLDRTKEPG AQAEPLYLDV MTALAEAFNN GERETLPRVI GGRYGLSSKE FGPDCVLAVF AELNAAKPKA RFTVGIYDDV TNLSLPLPEN TLPNSAKLEA LFYGLGSDGS VSATKNNIKI IGNSTPWYAQ GYFVYDSKKA GGLTVSHLRV SEQPIRSAYL ISQADFVGCH QLQFIDKYQM VERLKPGGIF LLNTPYSADE VWSRLPQEVQ AVLNQKKARF YVINAAKIAR ECGLAARINT VMQMAFFHLT QILPGDSALA ELQGAIAKSY SSKGQDLVER NWQALALARE SVEEVPLQPV NPHSANRPPV VSDAAPDFVK TVTAAMLAGL GDALPVSALP PDGTWPMGTT RWEKRNIAEE IPIWKEELCT QCNHCVAACP HSAIRAKVVP PEAMENAPAS LHSLDVKSRD MRGQKYVLQV APEDCTGCNL CVEVCPAKDR QNPEIKAINM MSRLEHVEEE KINYDFFLNL PEIDRSKLER IDIRTSQLIT PLFEYSGACS GCGETPYIKL LTQLYGDRML IANATGCSSI YGGNLPSTPY TTDANGRGPA WANSLFEDNA EFGLGFRLTV DQHRVRVLRL LDQFADKIPA ELLTALKSDA TPEIRREQVA ALRQQLNDVA EAHELLRDAD ALVEKSIWLI GGDGWAYDIG FGGLDHVLSL TENVNILVLD TQCYSNTGGQ ASKATPLGAV TKFGEHGKRK ARKDLGVSMM MYGHVYVAQI SLGAQLNQTV KAIQEAEAYP GPSLIIAYSP CEEHGYDLAL SHDQMRQLTA TGFWPLYRFD PRRADEGKLP LALDSRPPSE ALEETLLHEQ RFRRLNSQQP EVAEQLWKDA AADLQKRYDF LAQMAGKAEK SNTD
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