| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1759 |
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| Symbol | hrpA |
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| ID | 6145514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1763965 |
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| End bp | 1767867 |
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| Gene Length | 3903 bp |
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| Protein Length | 1300 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641616635 |
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| Product | ATP-dependent RNA helicase HrpA |
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| Protein accession | YP_001743813 |
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| Protein GI | 170684173 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.00000010565 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAGAAC AACAAAAATT GACCTTTACG GCCTTGCAGC AACGGTTGGA TTCGCTGATG
CTGCGTGACA GACTGCGTTT TTCCCGCCGT CTGCACGGCG TGAAGAAGGT TAAAAATCCT
GATGCACAAC AGGCCATTTT CCAGGAGATG GCGAAAGAGA TTGACCAGGC GGCAGGGAAA
GTCCTGCTGC GTGAAGCAGT ACGACCGGAA ATCACTTATC CAGACAATTT GCCGGTTAGT
CAGAAAAAGC AGGACATTCT CGAAGCAATC CGTGATCACC AGGTGGTGAT CGTCGCCGGG
GAAACGGGTT CCGGTAAAAC GACTCAGCTA CCGAAAATCT GTATGGAACT GGGCCGCGGG
ATTAAAGGGC TGATCGGCCA TACCCAGCCG CGTCGTCTGG CGGCACGAAC GGTGGCGAAC
CGTATTGCGG AAGAGCTGAA AACGGAGCCG GGCGGTTGCA TCGGGTATAA AGTGCGTTTC
AGCGATCACG TAAGTGATAA CACGATGGTC AAGCTGATGA CCGACGGTAT CCTGCTGGCG
GAGATCCAGC AAGACCGCCT GCTGATGCAG TACGACACTA TCATTATTGA CGAAGCGCAC
GAACGCAGCC TGAATATCGA TTTTCTGCTC GGCTATTTGA AAGAGTTGCT GCCGCGGCGT
CCTGACTTAA AAATCATTAT CACTTCCGCG ACTATCGACC CGGAACGCTT TTCGCGCCAC
TTTAATAATG CGCCGATTAT CGAAGTCTCC GGTCGGACCT ATCCGGTGGA AGTGCGCTAT
CGCCCGATCG TTGAAGAAGC TGATGACACC GAGCGCGATC AGTTGCAGGC GATTTTTGAC
GCCGTAGACG AACTGAGCCA GGAAAGCCCT GGCGACATTC TGATCTTTAT GAGCGGTGAG
CGGGAAATTC GCGATACCGC CGATGCGCTG AACAAGCTAA ATCTGCGGCA TACCGAAATC
TTGCCGCTTT ATGCGCGGCT TTCGAACAGC GAACAGAACC GCGTGTTCCA GTCGCACAGT
GGACGGCGCA TTGTGCTGGC GACCAACGTC GCGGAAACCT CGCTGACCGT ACCGGGTATT
AAATACGTTA TCGACCCCGG TACAGCGCGT ATCAGCCGCT ACAGCTATCG CACCAAAGTG
CAGCGTTTGC CGATTGAGCC CATTTCGCAG GCTTCAGCTA ATCAGCGTAA AGGCCGCTGT
GGTCGTGTGT CCGAAGGGAT CTGTATTCGT CTCTATTCCG AAGACGATTT CCTTTCGCGC
CCGGAATTTA CCGATCCGGA GATTCTGCGT ACCAACCTGG CCTCGGTTAT TTTGCAGATG
ACTGCGCTGG GGCTGGGCGA TATCGCTGCG TTCCCGTTTG TTGAAGCACC GGATAAACGC
AATATCCAGG ATGGCGTGCG TCTGCTCGAA GAACTGGGCG CGATCACCAC GGATGAACAG
GCCAGCGCCT ATAAACTGAC GCCGCTCGGT CGCCAGCTTT CGCAATTGCC TGTCGATCCT
CGTCTGGCGC GTATGGTGCT GGAAGCGCAG AAACATGGCT GCGTGCGTGA GGCGATGATT
ATCACGTCCG CGCTCTCCAT TCAGGATCCG CGCGAGCGTC CGATGGATAA ACAGCAGGCA
TCGGACGAAA AACATCGTCG CTTCCACGAC AAAGAATCCG ACTTCCTCGC GTTTGTAAAT
CTGTGGAATT ATCTTGGCGA GCAGCAAAAG GCGCTTTCTT CCAACGCCTT CCGTCGCCTG
TGTCGTACCG ATTATCTCAA CTATCTGCGC GTGCGCGAAT GGCAGGATAT CTACACCCAG
TTGCGTCAGG TAGTGAAAGA ACTTGGCATT CCGGTTAACA GCGAACCGGC GGAGTATCGC
GAAATTCACA TCGCCTTACT GACCGGTTTG CTTTCCCATA TCGGCATGAA AGATGCCGAT
AAACAAGAAT ATACCGGCGC ACGTAACGCG CGTTTCTCCA TTTTCCCCGG TTCCGGCTTA
TTTAAAAAGC CGCCGAAATG GGTAATGGTG GCGGAACTGG TAGAAACCAG CCGCCTGTGG
GGGCGCATTG CTGCGCGTAT CGACCCGGAA TGGGTAGAAC CCGTTGCTCA GCATTTGATT
AAACGCACCT ACAGCGAACC GCACTGGGAA CGGGCGCAGG GCGCGGTGAT GGCAACGGAA
AAAGTCACTG TTTATGGTTT GCCGATTGTT GCTGCGCGCA AGGTCAACTA CAGCCAGATC
GATCCGGCGT TATGTCGTGA ACTCTTTATT CGCCACGCTC TGGTGGAAGG TGACTGGCAG
ACGCGTCACG CATTCTTCCG TGAAAACCTG AAACTGCGGG CCGAAGTGGA AGAGCTGGAA
CACAAATCAC GTCGCCGCGA TATTCTGGTT GATGACGAAA CGTTGTTTGA GTTCTACGAC
CAGCGCATCC GCCACGATGT AATCTCCGCT CGTCACTTCG ATAGCTGGTG GAAAAAAGTC
AGCCGCGAAA CGCCTGATTT GCTCAACTTT GAAAAGAGCA TGTTGATCAA AGAAGGGGCG
GAAAAAATCA GCAAGCTGGA TTATCCGAAC TTCTGGCATC AGGGCAATCT CAAGCTGCGT
TTGAGCTATC AGTTTGAGCC CGGCGCGGAT GCTGACGGTG TGACTGTGCA TATCCCGCTG
CCGCTGCTTA ATCAGGTAGA AGAGAGCGGG TTTGAATGGC AAATCCCCGG CCTGCGCCGC
GAACTGGTGA TTGCTCTGAT TAAATCGTTG CCGAAACCGG TACGCCGTAA TTTTGTACCT
GCGCCAAACT ATGCCGAAGC GTTTTTAGGC CGCGTCAAAC CGCTGGAGTT ACCGTTGCTC
GACAGTCTTG AGCGCGAGTT ACGGCGGATG ACCGGTGTTA CCGTTGACCG CGAAGACTGG
CACTGGGATC AGGTGCCTGA TCACCTGAAA ATCACCTTCC GCGTGGTGGA TGACAAAAAC
AAGAAGCTAA AAGAAGGGCG CTCATTACAG GATCTGAAAG ATGCGCTGAA AGGCAAAGTG
CAGGAAACGC TGTCTGCGGT GGCGGATGAC GGTATCGAGC AGAGCGGCTT ACATATCTGG
AGTTTTGGTC AGCTGCCGGA AAGCTACGAA CAGAAGCGTG GCAACTATAA AGTGAAGGCG
TGGCCAGCGC TGGTGGATGA ACGCGACAGT GTGGCAATCA AATTGTTTGA TAATCCGCTG
GAACAAAAGC AGGCAATGTG GAACGGTCTT CGCCGTCTAC TGCTGCTGAA TATTCCATCG
CCGATCAAAT ATTTGCATGA AAAGTTACCG AACAAAGCCA AGCTGGGGCT GTACTTTAAC
CCGTATGGCA AAGTGCTGGA GCTGATCGAC GACTGTATCT CCTGCGGGGT GGATCAACTG
ATCGACGCCA ATGGTGGCCC GGTCTGGACG GAAGAAGGCT TTGCTGCGCT GCATGAAAAA
GTCCGTGCTG AACTGAACGA CACGGTGGTG GATATTGCGA AGCAGGTCGA GCAAATCCTC
ACTGCGGTGT TCAATATCAA TAAACGTCTG AAAGGGCGGG TGGATATGAC TATGGCGCTG
GGGCTTTCTG ACATTAAAGC GCAGATGGGC GGGTTGGTAT ATCGCGGTTT TGTCACTGGT
AACGGCTTCA AACGGTTGGG CGACACGCTG CGTTATTTGC AGGCGATTGA AAAACGACTG
GAAAAACTGG CGGTTGATCC GCATCGTGAC CGTGCTCAGA TGCTGAAAGT CGAAAACGTC
CAGCAGGCGT GGCAGCAATG GATCAACAAA CTGCCGCCCG CACGTCGTGA GGATGAAGAC
GTGAAAGAGA TCCGTTGGAT GATAGAAGAG TTGCGCGTTA GTTACTTCGC TCAACAACTT
GGTACGCCTT ATCCGATTTC AGATAAGCGT ATTTTGCAGG CGATGGAGCA GATTAGCGGT
TAA
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| Protein sequence | MTEQQKLTFT ALQQRLDSLM LRDRLRFSRR LHGVKKVKNP DAQQAIFQEM AKEIDQAAGK
VLLREAVRPE ITYPDNLPVS QKKQDILEAI RDHQVVIVAG ETGSGKTTQL PKICMELGRG
IKGLIGHTQP RRLAARTVAN RIAEELKTEP GGCIGYKVRF SDHVSDNTMV KLMTDGILLA
EIQQDRLLMQ YDTIIIDEAH ERSLNIDFLL GYLKELLPRR PDLKIIITSA TIDPERFSRH
FNNAPIIEVS GRTYPVEVRY RPIVEEADDT ERDQLQAIFD AVDELSQESP GDILIFMSGE
REIRDTADAL NKLNLRHTEI LPLYARLSNS EQNRVFQSHS GRRIVLATNV AETSLTVPGI
KYVIDPGTAR ISRYSYRTKV QRLPIEPISQ ASANQRKGRC GRVSEGICIR LYSEDDFLSR
PEFTDPEILR TNLASVILQM TALGLGDIAA FPFVEAPDKR NIQDGVRLLE ELGAITTDEQ
ASAYKLTPLG RQLSQLPVDP RLARMVLEAQ KHGCVREAMI ITSALSIQDP RERPMDKQQA
SDEKHRRFHD KESDFLAFVN LWNYLGEQQK ALSSNAFRRL CRTDYLNYLR VREWQDIYTQ
LRQVVKELGI PVNSEPAEYR EIHIALLTGL LSHIGMKDAD KQEYTGARNA RFSIFPGSGL
FKKPPKWVMV AELVETSRLW GRIAARIDPE WVEPVAQHLI KRTYSEPHWE RAQGAVMATE
KVTVYGLPIV AARKVNYSQI DPALCRELFI RHALVEGDWQ TRHAFFRENL KLRAEVEELE
HKSRRRDILV DDETLFEFYD QRIRHDVISA RHFDSWWKKV SRETPDLLNF EKSMLIKEGA
EKISKLDYPN FWHQGNLKLR LSYQFEPGAD ADGVTVHIPL PLLNQVEESG FEWQIPGLRR
ELVIALIKSL PKPVRRNFVP APNYAEAFLG RVKPLELPLL DSLERELRRM TGVTVDREDW
HWDQVPDHLK ITFRVVDDKN KKLKEGRSLQ DLKDALKGKV QETLSAVADD GIEQSGLHIW
SFGQLPESYE QKRGNYKVKA WPALVDERDS VAIKLFDNPL EQKQAMWNGL RRLLLLNIPS
PIKYLHEKLP NKAKLGLYFN PYGKVLELID DCISCGVDQL IDANGGPVWT EEGFAALHEK
VRAELNDTVV DIAKQVEQIL TAVFNINKRL KGRVDMTMAL GLSDIKAQMG GLVYRGFVTG
NGFKRLGDTL RYLQAIEKRL EKLAVDPHRD RAQMLKVENV QQAWQQWINK LPPARREDED
VKEIRWMIEE LRVSYFAQQL GTPYPISDKR ILQAMEQISG
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