| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1750 |
|---|
| Symbol | mdoD |
|---|
| ID | 6143428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 1752415 |
|---|
| End bp | 1754034 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641616626 |
|---|
| Product | glucan biosynthesis protein D |
|---|
| Protein accession | YP_001743804 |
|---|
| Protein GI | 170679744 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 2.5781800000000004e-18 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCCG TGTGCGGTAC CAGCGGCATT GCTTCTCTTT TTTCTCAGGC GGCATTCGCG
GCAGATTCTG ATATTGCCGA CGGGCAAACC CAGCGTTTTG ACTTCTCCAT TCTACAGTCA
ATGGCGCACG ACTTAGCGCA AACAGCGTGG CGTGGTGCGC CGCGTCCGTT ACCTGACACT
CTGGCGACAA TGACGCCGCA GGCTTATAAC AGTATTCAAT ACGACGCCGA AAAATCGCTC
TGGCATAACG TTGAGAACCG TCAACTGGAC GCTCAGTTCT TCCATATGGG AATGGGATTC
CGTCGCCGCG TTCGTATGTT TTCTGTAGAT CCCGCAACAC ATCTGGCGCG TGAAATTCAC
TTTCGCCCGG AGTTGTTCAA ATACAACGAT GCGGGTGTTG ATACCAAACA ATTAGAAGGG
CAAAGCGATC TCGGTTTTGC CGGTTTTCGC GTGTTTAAAG CCCCCGAACT GGCGCGCCGT
GATGTCGTAT CATTCCTCGG TGCGAGTTAT TTCCGCGCCG TTGACGACAC ATATCAATAC
GGTCTATCGG CTCGCGGCCT GGCGATCGAC ACTTACACCG ACAGTAAAGA AGAGTTCCCC
GACTTTACCG CCTTCTGGTT TGATACGGTA AAACCGGGGG CAACCACCTT TACCGTTTAT
GCGTTGCTCG ATAGCGCCAG CATTACTGGT GCCTATAAGT TCACTATCCA TTGCGAGAAA
AGTCAGGTGA TTATGGATGT GGAAAATCAC CTGTATGCGC GCAAAGACAT TAAACAGCTG
GGCATTGCGC CGATGACCAG TATGTTCAGC TGCGGTACTA ATGAACGTCG GATGTGCGAC
ACCATTCATC CGCAAATCCA TGACTCTGAT CGTTTGTCCA TGTGGCGGGG CAACGGCGAG
TGGATTTGTC GTCCGCTGAA CAATCCGCAA AAATTGCAGT TCAATGCTTA CACCGACAAC
AACCCGAAAG GGTTTGGTTT ATTGCAACTG GATCGTGATT TCTCCCATTA TCAGGACATT
ATGGGCTGGT ATAACAAACG CCCAAGTCTG TGGGTGGAAC CGCGTAACAA GTGGGGTAAG
GGCACCATCG GCCTGATGGA AATCCCAACA ACGGGCGAAA CGCTGGATAA CATTGTCTGC
TTCTGGCAGC CAGAAAAAGC TGTAAAAGCG GGTGATGAGT TTGCATTCCA GTATCGTCTG
TACTGGAGTG CGCAACCGCC TGTTCATTGC CCATTAGCGC GCGTTATGGC GACGCGTACC
GGCATGGGTG GTTTCCCGGA AGGTTGGGCT CCAGGTGAAC ACTATCCCGA AAAATGGGCG
CGTCGTTTTG CCGTCGATTT CGTTGGTGGT GATCTGAAAG CTGCCGCGCC AAAAGGCATT
GAGCCGGTGA TTACGCTTTC CAGTGGGGAA GCGAAGCAAA TCGAAATTCT CTATATTGAA
CCCATTGATG GTTATCGTAT TCAGTTTGAC TGGTATCCGA CTTCGGACTC CACTGATCCG
GTCGATATGC GGATGTATCT GCGTTGTCAG GGCGACGCTA TCAGTGAAAC ATGGCTGTAT
CAGTATTTCC CGCCAGCGCC CGATAAACGT CAGTATGTTG ACGACCGCGT GATGAGTTAA
|
|---|
| Protein sequence | MAAVCGTSGI ASLFSQAAFA ADSDIADGQT QRFDFSILQS MAHDLAQTAW RGAPRPLPDT
LATMTPQAYN SIQYDAEKSL WHNVENRQLD AQFFHMGMGF RRRVRMFSVD PATHLAREIH
FRPELFKYND AGVDTKQLEG QSDLGFAGFR VFKAPELARR DVVSFLGASY FRAVDDTYQY
GLSARGLAID TYTDSKEEFP DFTAFWFDTV KPGATTFTVY ALLDSASITG AYKFTIHCEK
SQVIMDVENH LYARKDIKQL GIAPMTSMFS CGTNERRMCD TIHPQIHDSD RLSMWRGNGE
WICRPLNNPQ KLQFNAYTDN NPKGFGLLQL DRDFSHYQDI MGWYNKRPSL WVEPRNKWGK
GTIGLMEIPT TGETLDNIVC FWQPEKAVKA GDEFAFQYRL YWSAQPPVHC PLARVMATRT
GMGGFPEGWA PGEHYPEKWA RRFAVDFVGG DLKAAAPKGI EPVITLSSGE AKQIEILYIE
PIDGYRIQFD WYPTSDSTDP VDMRMYLRCQ GDAISETWLY QYFPPAPDKR QYVDDRVMS
|
|---|
| |