| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1732 |
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| Symbol | ydcU |
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| ID | 6146787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1736464 |
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| End bp | 1737405 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641616608 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_001743786 |
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| Protein GI | 170683660 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.000000109023 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGATGA ATGTATTGCA ATCACCTTCA CGTCCAGGTC TGGGTAAGGT GTCCTGTTTC
TTCTGGCGTA ATCCGGGGCT GGGGCTGTTT TTACTGCTGC TTGGCCCGCT AATGTGGTTT
GGCATTGTCT ATTTCGGCTC GCTGCTGACG CTGTTATGGC AGGGCTTTTA TACCTTTGAC
GATTTCACCA TGTCGGTAAC GCCGGAACTG ACGCTGGCGA ATATCCGTGC GCTGTTTAAT
CCGGCGAATT ACGACATCAT TCTCCGCACG CTGACTATGG CTGTGGCAGT CACTATCGCC
AGCGCCATTC TGGCTTTTCC AATGGCGTGG TATATGGCGC GCTATACCAG CGGGAAAATG
AAAGCGTTTT TTTATATTGC GGTAATGTTG CCGATGTGGG CGAGCTACAT TGTTAAAGCC
TATGCCTGGA CGTTATTGCT GGCAAAAGAT GGCGTGGCTC AGTGGTTTTT ACAACATCTT
GGGCTGGAAC CACTGCTGAC TGCGTTCCTT ACATTACCTG CGGTGGGCGG CAATACGCTG
TCAACTTCCG GGCTGGGGCG CTTTCTGGTG TTTCTCTATA TCTGGCTGCC GTTCATGATC
CTCCCGGTGC AGGCGGCGCT TGAGCGTTTG CCGCCGTCAT TGTTGCAGGC GTCAGCTGAT
CTCGGCGCAC GTCCACGACA AACCTTTCGC TATGTGGTGC TGCCGCTGGC GATCCCGGGT
ATTGCCGCTG GCTCTATCTT TACCTTCTCA CTCACACTGG GCGATTTTAT CGTCCCGCAG
CTGGTTGGCC CGCCAGGATA TTTTATCGGC AATATGGTTT ATTCCCAGCA GGGGGCGATT
GGCAATATGC CGATGGCGGC GGCATTCACC CTGGTGCCGA TTGTTCTCAT CGCACTGTAC
CTGGCGTTCG TGAAACGTCT GGGAGCGTTC GATGCACTCT GA
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| Protein sequence | MAMNVLQSPS RPGLGKVSCF FWRNPGLGLF LLLLGPLMWF GIVYFGSLLT LLWQGFYTFD
DFTMSVTPEL TLANIRALFN PANYDIILRT LTMAVAVTIA SAILAFPMAW YMARYTSGKM
KAFFYIAVML PMWASYIVKA YAWTLLLAKD GVAQWFLQHL GLEPLLTAFL TLPAVGGNTL
STSGLGRFLV FLYIWLPFMI LPVQAALERL PPSLLQASAD LGARPRQTFR YVVLPLAIPG
IAAGSIFTFS LTLGDFIVPQ LVGPPGYFIG NMVYSQQGAI GNMPMAAAFT LVPIVLIALY
LAFVKRLGAF DAL
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