| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1702 |
|---|
| Symbol | |
|---|
| ID | 6144352 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 1705762 |
|---|
| End bp | 1706862 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641616578 |
|---|
| Product | porin family protein |
|---|
| Protein accession | YP_001743756 |
|---|
| Protein GI | 170679684 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0189246 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTAA AAATAGTTGC GGTGGTTGTA ACTGGTTTGT TAGCTGCGAA CGTAGCACAC
GCTGCCGAAG TCTATAACAA GGATGGTAAT AAACTCGACC TTTATGGCAA GGTTACCGCT
CTACGTTATT TTACTGATGA TAAGCGTGAC GATGGTGATA AAACTTATGC CCGTCTCGGC
TTTAAAGGAG AAACGCAAAT CAATGATCAA ATGATTGGTT TTGGTCACTG GGAATATGAT
TTTAAAGGCT ATAACGATGA AGCCAACGGC TCGCGCGGTA ACAAGACCCG TCTGGCCTAT
GCAGGTTTAA AAATTAGTGA ATTTGGCTCT CTGGACTATG GTCGTAACTA CGGTGTCGGC
TATGACATTG GTTCATGGAC CGATATGTTG CCAGAATTTG GTGGCGATAC CTGGAGTCAG
AAAGATGTCT TCATGACATA CCGTACTACC GGTGTGGCAA CCTATCGCAA CTACGATTTC
TTCGGCTTAA TTGAAGGTCT GAACTTTGCC GCGCAATATC AAGGCAAAAA TGAACGCACT
GACAATGGTC ATCTTTATGG TGCTGACTAC ACGCGTGCCA ATGGTGACGG TTTCGGTATC
TCCTCAACTT ATGTTTATGA TGGCTTTGGT ATCGGTGCGG TGTATACCAA ATCCGATCGG
ACAAATGCGC AGGAAAGAGC CGCTGCTAAT CCTCTCAATG CCTCCGGTAA GAATGCAGAA
CTGTGGGCTA CAGGTATAAA ATATGATGCC AACAACATCT ACTTTGCAGC TAATTACGCT
GAAACATTAA ACATGACCAC CTATGGCGAT GGTTATATCT CTAACAAAGC ACAAAGTTTT
GAAGTAGTGG CACAATATCA ATTCGACTTC GGCTTGCGCC CATCACTCGC TTACCTGAAA
TCGAAAGGCA GAGATCTGGG CCGCTACGGC GACCAGGACA TGATTGAGTA TATCGACGTT
GGTGCGACGT ATTTCTTCAA CAAAAATATG TCGACCTATG TTGATTATAA AATCAACCTG
ATTGATGAAA GCGACTTTAC CCGTGCCGTA GATATTCGCA CCGATAACAT CGTCGCAACG
GGAATTACCT ATCAGTTCTA A
|
|---|
| Protein sequence | MKLKIVAVVV TGLLAANVAH AAEVYNKDGN KLDLYGKVTA LRYFTDDKRD DGDKTYARLG
FKGETQINDQ MIGFGHWEYD FKGYNDEANG SRGNKTRLAY AGLKISEFGS LDYGRNYGVG
YDIGSWTDML PEFGGDTWSQ KDVFMTYRTT GVATYRNYDF FGLIEGLNFA AQYQGKNERT
DNGHLYGADY TRANGDGFGI SSTYVYDGFG IGAVYTKSDR TNAQERAAAN PLNASGKNAE
LWATGIKYDA NNIYFAANYA ETLNMTTYGD GYISNKAQSF EVVAQYQFDF GLRPSLAYLK
SKGRDLGRYG DQDMIEYIDV GATYFFNKNM STYVDYKINL IDESDFTRAV DIRTDNIVAT
GITYQF
|
|---|
| |