| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1687 |
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| Symbol | yddR |
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| ID | 6145251 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 1691220 |
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| End bp | 1692242 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641616563 |
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| Product | inner membrane ABC transporter permease protein yddR |
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| Protein accession | YP_001743741 |
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| Protein GI | 170681904 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.930254 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGACCTTCT GGAGCATTTT ACGCCAACGC TGCTGGGGGC TGGTGCTCGT GGTGGCGGGC
GTCTGCGTAA TTACGTTTAT TATCTCGCAT CTTATCCCCG GCGATCCGGC GCGGTTGCTG
GCTGGCGACC GCGCCAGCGA TGCCATCGTG GAAAATATTC GCCAGCAACT GGGGCTGGAC
CAGCCACTGT ACGTACAGTT TTACCGCTAC GTCAGCGATC TGTTTCAGGG TGATCTGGGA
ACATCCATTC GTACCGGGCG TCCGGTGCTG GAAGAGTTGC GTATATTTTT CCCGGCGACG
CTGGAACTGG CTTTTTGTGC CCTGCTGCTG GCACTTCTGA TTGGCATCCC GCTGGGCATA
CTCTCTGCAG TCTGGCGAAA TCGCTGGCTG GATCATCTGG TGCGAATAAT GGCCATTACC
GGAATCTCCA CACCTGCGTT CTGGCTTGGG CTGGGCGTCA TTGTGCTGTT TTATGGACAT
CTGCAAATTC TTCCCGGCGG CGGAAGGCTT GATGACTGGC TGGATCCACC AACGCACGTT
ACCGGCTTTT ATCTGCTCGA TGCGCTGCTT GAAGGCAACG GTGAGGTCTT CTTCAATGCG
TTGCAACATC TTATCTTACC GGCATTAACG CTGGCGTTCG TTCACCTGGG GATTGTCGCC
CGCCAGATCC GCTCAGCGAT GCTGGAACAA TTGAGTGAAG ACTACATTCG TACCGCCCGG
GCCAGCGGCT TGCCCGGCTG GTATATCGTT TTATGTTATG CGCTACCCAA TGCGTTGATC
CCCTCGATTA CCGTATTGGG ACTGGCACTG GGCGATTTGT TGTATGGCGC AGTGCTCACC
GAAACCGTTT TTGCCTGGCC CGGAATGGGT GCATGGGTAG TAACATCAAT ACAGGCGCTC
GACTTCCCGG CAGTGATGGG CTTTGCCGTC GTGGTTTCGT TTGCTTATGT GCTGGTGAAC
CTGGTGGTGG ATTTGCTCTA TTTGTGGATT GATCCGCGTA TCGGACGTGG AGGTGGTGAA
TGA
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| Protein sequence | MTFWSILRQR CWGLVLVVAG VCVITFIISH LIPGDPARLL AGDRASDAIV ENIRQQLGLD
QPLYVQFYRY VSDLFQGDLG TSIRTGRPVL EELRIFFPAT LELAFCALLL ALLIGIPLGI
LSAVWRNRWL DHLVRIMAIT GISTPAFWLG LGVIVLFYGH LQILPGGGRL DDWLDPPTHV
TGFYLLDALL EGNGEVFFNA LQHLILPALT LAFVHLGIVA RQIRSAMLEQ LSEDYIRTAR
ASGLPGWYIV LCYALPNALI PSITVLGLAL GDLLYGAVLT ETVFAWPGMG AWVVTSIQAL
DFPAVMGFAV VVSFAYVLVN LVVDLLYLWI DPRIGRGGGE
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