| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1666 |
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| Symbol | |
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| ID | 6142997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 1659328 |
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| End bp | 1661943 |
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| Gene Length | 2616 bp |
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| Protein Length | 871 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641616542 |
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| Product | fimbrial usher family protein |
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| Protein accession | YP_001743720 |
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| Protein GI | 170679788 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 0.504139 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATCAGG TGTTACTACT GCCTCGCTTT GCACGGCTTA CCATTGCCCT TGGCTTAGCA
ACTGCGGTAT TTCCCGTTGA CGCAGAGTTT TATTTTAATC CACGGTTTTT AAGCAATGAT
CTTGCTGAAT CTGTCGATTT ATCCGCCTTT ACTAAGGGAC GCGAGGCACC ACCTGGTACA
TATCGGGTCG ACATTTATTT GAACGACGAA TTTATGACTA GTCGGGATAT TACTTTTATT
GCAGATGATA ATAATGCAGA TCTCATCCCA TGCCTGAGTA CAGACCTTCT TGTCAGTCTT
GGCATAAAAA AATCAGCATT ATTAGACAAT AAGGAACATT CGGCAGAAAA ACATGTGTCG
GACAACAGCG CATGCACACC ACTTCGGGAT CGTTTGGCTG ACGCATCATC TGAGTTTAAT
GTTGGTCAGC AACATCTATC ACTCTCCGTT CCGCAAATTT ATGTTGGCAG AATGGCTCGC
GGCTATGTTT CTCCGGATCT GTGGGAAGAA GGAATAAATG CTGGGCTACT AAACTATAGT
TTTAATGGTA ATTCTATTAA TAATCGTGGC AACCATAATG CAGGAAAATC CAACTATGCA
TATTTGAATT TACAGAGTGG CATCAACATT GGTAGTTGGC GACTGCGCGA TAACTCAACG
TGGAGTTATA ACAGTGGGAG TAGCAATTCA TCTGACAGCA ATAAATGGCA GCATATCAAT
ACGTCGGCTG AACGTGACAT TATTCCCTTA CGCTCACGCT TAACGGTAGG TGATAGTTAT
ACCGATGGCG ATATTTTTGA TAGTGTGAAC TTTCGTGGCC TCAAAATAAA TTCAACAGAA
GCGATGTTGC CCGATAGCCA ACATGGTTTC GCTCCGGTGA TTCATGGTAT TGCCCGCAGC
ACCGCACAAG TGAGTGTAAA ACAGAATGGA TACGATGTTT ATCAGACTAC TGTCCCACCC
GGCCCTTTTA CTATTGATGA TATCAACTCT GCGGCCAATG GTGGTGATCT GCAAGTAACC
ATAAAAGAGG CAGACGGCAG TATTCAGACA TTATATGTTC CTTATTCGTC TGTTCCGGTT
CTCCAACGTG CTGGATATAC GCGTTATGCG CTTGCCATGG GGGAATATCG TAGTGGAAAT
AACCTGCAAA GCTCCCCCAA GTTCATACAA GGTAGCTTGA TGCATGGACT GGAAGGAAAC
TGGACACCTT ATGGCGGAAT GCAAATTGCA GAAGATTATC AGGCCTTCAA CCTTGGTATT
GGTAAAGATT TAGGACTTTT TGGTGCCTTT TCTTTCGATA TCACGCAGGC CAATACGACA
CTTGCAGATG GCACCCGTCA CAGCGGGCAA TCGATTAAAT CCGTCTACAG CAAATCCTTC
TACCAGACGG GAACCAATAT CCAGGTCGCA GGATATCGCT ATTCTACGCA AGGTTTTTAT
AACTTATCCG ACAGTGCCTA CAGTCGAATG AGTGGTTACA CCGTCAAGCC TCCTACCGGA
GACAGCAATG AGCAGACACA ATTTATTGAT TATTTTAATC TGTTCTACAG TAAGCGTGGT
CAGGAACAAA TAAGCATCTC TCAGCAGCTT GGAAATTACG GTACGACATT TTTCAGTGCC
AGTCGCCAAA GTTACTGGAA CACGTCACGC AGCGACCAGC AAATATCATT TGGATTAAAT
GTGCCGTTTA GTGATATTAC GACTTCGCTG AATTACAGCT ATTCCAATAA TATATGGCAA
AACGATCGGG ATCATTTACT TGCTTTTACG CTTAATGTTC CCTTCAGTCA TTGGATGCGT
ACAGACAGTC AGTCGGCATT TCGTAACTCA AACGCCAGTT ACAGTATGTC AAACGATTTG
AAAGGCGGCA TGACCAACCT ATCAGGGGTT TATGGCACTC TGCTGCCGGA TAATAACCTG
AATTATAGTG TTCAGGTCGG TAACACCCAC GGGGGTAATA CATCGTCTGG CACCAGTGGT
TACAGTTCTC TTAATTATCG TGGAGCTTAC GGTAATACGA ATATCGGTTA CAGTCGGAGT
GGTGACAGCA GCCAGATTTA TTACGGAATG AGTGGTGGCA TTATTGCTCA TGCTGATGGC
ATCACCTTTG GACAGCCACT GGGCGACACA ATGGTTCTGG TTAAGGCTCC TGGCGCTGAT
AATGTCAAAA TAGAGAACCA GACCGGAATT CATACCGACT GGCGTGGCTA TGCCATATTA
CCATTTGCGA CAGAATATAG AGAAAATCGT GTCGCTCTTA ACGCGAATTC CCTTGCAGAT
AATGTTGAAC TGGATGAAAC CGTAGTCACT GTCATCCCAA CTCACGGTGC TATTGCCAGA
GCAACATTTA ATGCACAAAT CGGCGGGAAA GTATTAATGA CGTTGAAGTA CGGTAATAAA
AGCGTTCCAT TCGGTGCAAT TGTCACTCAC GGAGAGAATA AAAATGGCAG CATTGTCGCG
GAAAATGGTC AGGTTTATCT GACTGGACTT CCACAGTCAG GGAAATTACA GGTTTCATGG
GGCAATGATA AAAACTCAAA CTGTATTGTC GATTACAAGC TTCCTGCAGT CTCTCCTGGA
ACCTTGCTGA ACCAGCAGAC AGCAATCTGT CGCTAA
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| Protein sequence | MHQVLLLPRF ARLTIALGLA TAVFPVDAEF YFNPRFLSND LAESVDLSAF TKGREAPPGT
YRVDIYLNDE FMTSRDITFI ADDNNADLIP CLSTDLLVSL GIKKSALLDN KEHSAEKHVS
DNSACTPLRD RLADASSEFN VGQQHLSLSV PQIYVGRMAR GYVSPDLWEE GINAGLLNYS
FNGNSINNRG NHNAGKSNYA YLNLQSGINI GSWRLRDNST WSYNSGSSNS SDSNKWQHIN
TSAERDIIPL RSRLTVGDSY TDGDIFDSVN FRGLKINSTE AMLPDSQHGF APVIHGIARS
TAQVSVKQNG YDVYQTTVPP GPFTIDDINS AANGGDLQVT IKEADGSIQT LYVPYSSVPV
LQRAGYTRYA LAMGEYRSGN NLQSSPKFIQ GSLMHGLEGN WTPYGGMQIA EDYQAFNLGI
GKDLGLFGAF SFDITQANTT LADGTRHSGQ SIKSVYSKSF YQTGTNIQVA GYRYSTQGFY
NLSDSAYSRM SGYTVKPPTG DSNEQTQFID YFNLFYSKRG QEQISISQQL GNYGTTFFSA
SRQSYWNTSR SDQQISFGLN VPFSDITTSL NYSYSNNIWQ NDRDHLLAFT LNVPFSHWMR
TDSQSAFRNS NASYSMSNDL KGGMTNLSGV YGTLLPDNNL NYSVQVGNTH GGNTSSGTSG
YSSLNYRGAY GNTNIGYSRS GDSSQIYYGM SGGIIAHADG ITFGQPLGDT MVLVKAPGAD
NVKIENQTGI HTDWRGYAIL PFATEYRENR VALNANSLAD NVELDETVVT VIPTHGAIAR
ATFNAQIGGK VLMTLKYGNK SVPFGAIVTH GENKNGSIVA ENGQVYLTGL PQSGKLQVSW
GNDKNSNCIV DYKLPAVSPG TLLNQQTAIC R
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