| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1657 |
|---|
| Symbol | lsrD |
|---|
| ID | 6143198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 1644583 |
|---|
| End bp | 1645575 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641616533 |
|---|
| Product | autoinducer-2 ABC transporter, permease protein LsrD |
|---|
| Protein accession | YP_001743711 |
|---|
| Protein GI | 170680972 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 0.924695 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATTC GCTACGGTTG GGAACTGGCT CTTGCCGCAC TGCTCGTTAT TGAGATTGTT
GCATTTGGTG CAATTAACCC GCGGATGTTA GATCTCAATA TGTTGCTGTT CAGCACCAGT
GACTTTATCT GCATTGGCAT TGTCGCCCTA CCGCTGACGA TGGTGATTGT CAGTGGTGGG
ATCGATATTT CGTTTGGTTC GACCATCGGC CTCTGCGCCA TTGCATTGGG CGTACTGTTT
CAAAGTGGTG TGCCGATGCC GCTGGCGATT CTTCTGACCT TACTGCTCGG CGCATTGTGC
GGGTTGATCA ACGCCGGATT AATTATCTAT ACCAAAGTTA ACCCGCTGGT GATTACGCTT
GGCACGCTGT ATCTGTTTGC CGGAAGCGCC CTGCTGCTTT CCGGGATGGC CGGAGCGACG
GGGTACGAAG GTATTGGTGG ATTCCCGATG GCGTTTACAG ATTTCGCTAA CCTGGATGTG
CTGGGACTCC CCGTTCCGCT GATTATCTTC CTGATATGTC TCCTCGTTTT CTGGCTCTGG
CTGCATAAAA CCCATGCCGG ACGTAACGTG TTTTTAATTG GGCAAAGCCC GCGTGTGGCG
GTTTATAGCG CGATTCCGGT AAACCGCACC TTGTGTGCGC TCTATGCCAT GACGGGGCTG
GCGTCTGCGG TCGCCGCTGT GCTGCTGGTA TCGTATTTTG GTTCAGCACG TTCCGATCTC
GGTGCGTCGT TTCTGATGCC CGCCATCACC GCCGTAGTGC TCGGCGGTGC CAATATTTAT
GGTGGTTCTG GTTCCATTAT CGGCACCGCC ATTGCGGTTT TATTAGTGGG ATATTTGCAA
CAAGGTTTGC AAATGGCAGG AGTGCCAAAT CAGGTGTCCA GCGCCCTTTC CGGTGCGCTA
CTTATCGTCG TTGTCGTAGG TCGTTCCGTT AGCCTGCATC GCCAGCAAAT TAAAGAGTGG
CTGGCGCGTC GGGCCAATAA CCCATTGCCA TAA
|
|---|
| Protein sequence | MRIRYGWELA LAALLVIEIV AFGAINPRML DLNMLLFSTS DFICIGIVAL PLTMVIVSGG
IDISFGSTIG LCAIALGVLF QSGVPMPLAI LLTLLLGALC GLINAGLIIY TKVNPLVITL
GTLYLFAGSA LLLSGMAGAT GYEGIGGFPM AFTDFANLDV LGLPVPLIIF LICLLVFWLW
LHKTHAGRNV FLIGQSPRVA VYSAIPVNRT LCALYAMTGL ASAVAAVLLV SYFGSARSDL
GASFLMPAIT AVVLGGANIY GGSGSIIGTA IAVLLVGYLQ QGLQMAGVPN QVSSALSGAL
LIVVVVGRSV SLHRQQIKEW LARRANNPLP
|
|---|
| |