| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1656 |
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| Symbol | lsrB |
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| ID | 6146664 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1643549 |
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| End bp | 1644571 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641616532 |
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| Product | autoinducer-2 ABC transporter, periplasmic autoinducer-2-binding protein LsrB |
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| Protein accession | YP_001743710 |
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| Protein GI | 170683902 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.915818 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 0.792021 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACTTC ATCGCTTTAA GAAAATCGCC TTACTTAGCG CTCTTGGCAT TGCCGCAATC
TCTATGAATG TGCAGGCCGC AGAGCGTATT GCATTTATTC CCAAACTGGT TGGCGTGGGA
TTTTTTACCA GCGGTGGCAA CGGCGCACAA CAAGCGGGTA AAGAGCTGGG CGTTGATGTG
ACCTACGACG GGCCGACAGA ACCCAGTGTT TCTGGTCAGG TACAGTTGAT TAATAACTTC
GTCAATCAGG GTTATAACGC CATTATCGTT TCTGCGGTTT CGCCTGATGG CTTGTGTCCG
GCACTGAAAC GCGCCATGCA ACGTGGTGTG AGAGTGCTGA CCTGGGACTC TGATACCAAA
CCGGAGTGCC GCTCTTACTA CATTAATCAG GGAACGCCCG CCCAGTTGGG AGGTATGTTG
GTGGATATGG CGGCGCGTCA GGTGAATAAA GACAAAGCCA AAGTCGCGTT TTTCTACTCA
AGCCCCACCG TTACGGACCA AAACCAGTGG GTGAAAGAAG CGAAAGCGAA AATCGCCAAA
GAGCATCCAG GCTGGGAAAT TGTCACTACG CAGTTTGGCT ATAACGATGC CACTAAATCG
TTACAAACCG CAGAAGGAAT ATTAAAAGCC TATAGCGATC TCGACGCCAT TATCGCCCCC
GATGCCAATG CCCTGCCCGC TGCCGCACAA GCCGCAGAAA ACCTGAAAAA TGACAAAGTT
GCGATTGTCG GATTCAGTAC GCCAAATGTG ATGCGTCCAT ATGTGGAACG CGGCACGGTG
AAAGAATTTG GCCTGTGGGA TGTGGTTCAG CAAGGCAAAA TATCAGTTTA TGTCGCGGAT
GCATTATTGA AAAAAGGATC AATGAAAACG GGCGACAAGC TGGATATTCA GGGCGTAGGT
CAGGTTGAAG TCTCGCCAAA CAGCGTTCAG GGCTATGACT ACGAAGCGGA TGGTAATGGC
ATCGTACTGT TACCGGAGCG CGTGATATTC AACAAAGAGA ATATCGGCAA ATACGATTTC
TGA
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| Protein sequence | MTLHRFKKIA LLSALGIAAI SMNVQAAERI AFIPKLVGVG FFTSGGNGAQ QAGKELGVDV
TYDGPTEPSV SGQVQLINNF VNQGYNAIIV SAVSPDGLCP ALKRAMQRGV RVLTWDSDTK
PECRSYYINQ GTPAQLGGML VDMAARQVNK DKAKVAFFYS SPTVTDQNQW VKEAKAKIAK
EHPGWEIVTT QFGYNDATKS LQTAEGILKA YSDLDAIIAP DANALPAAAQ AAENLKNDKV
AIVGFSTPNV MRPYVERGTV KEFGLWDVVQ QGKISVYVAD ALLKKGSMKT GDKLDIQGVG
QVEVSPNSVQ GYDYEADGNG IVLLPERVIF NKENIGKYDF
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