| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1591 |
|---|
| Symbol | rstA |
|---|
| ID | 6146951 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 1579611 |
|---|
| End bp | 1580330 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641616468 |
|---|
| Product | DNA-binding transcriptional regulator RstA |
|---|
| Protein accession | YP_001743646 |
|---|
| Protein GI | 170683236 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00390701 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 67 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACTA TCGTATTTGT GGAAGATGAT GCGGAAGTCG GTGCACTGAT TGCCGCATAC
CTGGCAAAAC ATGATATGCA GGTTACCGTA GAGCCGCGCG GCGACCGGGC CGAAGAAACT
ATTCTGCGAG AAAATCCGGA TTTGGTGTTA CTCGACATCA TGCTACCAGG CAAGGACGGC
ATGACCATTT GTCGTGATTT ACGCGCAAAG TGGTCCGGAC CGATTGTTCT TCTAACCTCT
CTCGATAGCG ATATGAACCA CATCCTGGCA CTGGAAATGG GCGCCTGCGA CTATATTCTC
AAAACGACGC CCCCTGCTGT TTTGCTAGCG CGTTTACGTT TGCATTTGCG TCAGAATGAG
CAAGCCACAG TGACCAAAGG TATTCAGGAA ACGTCTCTGA CTCCCTACAA AGCCCTGCAT
TTCGGCACGT TGACCATCGA TCCCATCAAC CGCGTAGTCA CCCTGGCTAA CACTGAAATC
TCGCTCTCGA CAGCTGATTT CGAATTATTG TGGGAATTAG CTACCCATGC CGGGCAAATC
ATGGACCGCG ATGCATTGCT GAAAAATTTA CGCGGCGTCA GTTATGACGG TCTGGATCGT
AGCGTGGACG TGGCTATTTC GCGGTTAAGA AAAAAACTGC TCGATAACGC CGCAGAACCT
TATCGTATTA AAACCGTGCG TAACAAAGGC TATCTTTTTG CGCCTCATGC GTGGGAATAA
|
|---|
| Protein sequence | MNTIVFVEDD AEVGALIAAY LAKHDMQVTV EPRGDRAEET ILRENPDLVL LDIMLPGKDG
MTICRDLRAK WSGPIVLLTS LDSDMNHILA LEMGACDYIL KTTPPAVLLA RLRLHLRQNE
QATVTKGIQE TSLTPYKALH FGTLTIDPIN RVVTLANTEI SLSTADFELL WELATHAGQI
MDRDALLKNL RGVSYDGLDR SVDVAISRLR KKLLDNAAEP YRIKTVRNKG YLFAPHAWE
|
|---|
| |