Gene EcSMS35_1567 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_1567 
SymbolrnfE 
ID6145565 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp1551331 
End bp1552026 
Gene Length696 bp 
Protein Length231 aa 
Translation table11 
GC content53% 
IMG OID641616444 
Productelectron transport complex RsxE subunit 
Protein accessionYP_001743622 
Protein GI170680858 
COG category[C] Energy production and conversion 
COG ID[COG4660] Predicted NADH:ubiquinone oxidoreductase, subunit RnfE 
TIGRFAM ID[TIGR01948] electron transport complex, RnfABCDGE type, E subunit 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.276457 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones64 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCGAAA TTAAAGACGT TATTGTTCAG GGGTTGTGGA AAAACAACTC TGCGCTGGTC 
CAGCTGCTCG GCCTCTGTCC GCTATTGGCG GTCACGTCCA CTGCCACTAA CGCTCTGGGT
TTAGGACTTG CGACTACGCT GGTACTGACG CTGACCAACT TGACCATTTC GACGCTGCGT
CACTGGACGC CAGCCGAGAT CCGCATTCCC ATTTACGTGA TGATCATCGC CTCGGTGGTC
AGCGCTGTAC AGATGCTGAT CAACGCCTAC GCCTTTGGCC TGTATCAATC ATTAGGGATT
TTTATTCCGC TGATTGTCAC TAACTGTATC GTTGTGGGCC GCGCTGAAGC CTTCGCCGCC
AAAAAAGGTC CGGCGCTTTC GGCACTGGAC GGCTTTTCAA TTGGTATGGG CGCAACCTGC
GCCATGTGCG TGCTGGGTTC ACTACGCGAA ATTATCGGCA ATGGCACGTT GTTTGACGGT
GCAGATGCGC TGTTAGGTAG CTGGGCAAAA GTATTACGCG TGGAAATTTT CCACACCGAC
TCCCCTTTCC TGCTGGCGAT GCTGCCACCA GGTGCATTTA TTGGCCTGGG ACTGATGCTG
GCAGGGAAAT ACCTGATTGA TGAAAGAATG AAAAAGCGCC GTACTGAAGC AGCTGCCGAA
CGTGCATTGC CAAACGGTGA AACAGGGAAT GTCTGA
 
Protein sequence
MSEIKDVIVQ GLWKNNSALV QLLGLCPLLA VTSTATNALG LGLATTLVLT LTNLTISTLR 
HWTPAEIRIP IYVMIIASVV SAVQMLINAY AFGLYQSLGI FIPLIVTNCI VVGRAEAFAA
KKGPALSALD GFSIGMGATC AMCVLGSLRE IIGNGTLFDG ADALLGSWAK VLRVEIFHTD
SPFLLAMLPP GAFIGLGLML AGKYLIDERM KKRRTEAAAE RALPNGETGN V