Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1543 |
Symbol | |
ID | 6142903 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 1527593 |
End bp | 1528420 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641616420 |
Product | NlpC/P60 family protein |
Protein accession | YP_001743598 |
Protein GI | 170683187 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 0.179042 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCGCGGA TAAACCGTAT TTCGATCACG CTCTGTGCTT TACTTTTTAC CACCCTGCCT TTAACGCCTA TGGCCCATGC TTCAAAGCAA GCCAGGGAGA GTTCTGCTAC TACTCATATC ACCAAAAAAG CAGATAAAAA GAAAAGCACG GCAACCACCA AAAAGACCCA GAAAGCCAGC CAGAAAACAG CGAAAAAAGC CGCCAGTAAA AGTACGATCA AAAGCAAAAC CGCTTCTTCC GTTAAAAAAT CTTCCATTAC CGCTTCTAAA AACGCCAAAA CTCGCAGCAA ACACGCCGTC AATAAAACGG CCTCAGCCAA CTTTACCGAA AAGTGTACCA AACGTAAGGG CTATAAATCG CATTGTGTGA AAGTCAAAAA TGCCGCGTCA GGAACCCTTG CCGACGCGCA CAAAGCGAAG GTGCAAAAAG CCACGAAAGT GGCAATGAAT AAACTGATGC AGCAAATTGG TAAGCCATAT CGTTGGGGCG GCAGCTCACC GCGTACCGGT TTTGATTGCA GCGGCCTGGT TTATTACGCT TATAAAGATT TGGTGAAAAT TCGTATTCCG CGTACGGCGA ATGAAATGTA TCACCTGCGA GATGCAGCGC CAATCGAACG TAGTGAACTG AAAAACGGCG ACCTGGTCTT TTTCCGTACT CAGGGACGCG GTACAGCCGA TCATGTCGGC GTATATGTCG GCAACGGCAA ATTTATTCAG TCACCGCGTA CGGGTCAGGA AATTCAAATC ACTTCTCTCA GTGAAGACTA CTGGCAGCGC CACTATGTTG GCGCTCGCCG GGTAATGACC CCAAAAACAC TTCGCTAA
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Protein sequence | MARINRISIT LCALLFTTLP LTPMAHASKQ ARESSATTHI TKKADKKKST ATTKKTQKAS QKTAKKAASK STIKSKTASS VKKSSITASK NAKTRSKHAV NKTASANFTE KCTKRKGYKS HCVKVKNAAS GTLADAHKAK VQKATKVAMN KLMQQIGKPY RWGGSSPRTG FDCSGLVYYA YKDLVKIRIP RTANEMYHLR DAAPIERSEL KNGDLVFFRT QGRGTADHVG VYVGNGKFIQ SPRTGQEIQI TSLSEDYWQR HYVGARRVMT PKTLR
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