| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1506 |
|---|
| Symbol | ydiM |
|---|
| ID | 6146007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 1490578 |
|---|
| End bp | 1491792 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641616384 |
|---|
| Product | major facilitator family transporter |
|---|
| Protein accession | YP_001743564 |
|---|
| Protein GI | 170681306 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.340818 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.000395679 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATC CCTATTACCC TACCGCACTG GGGTTGTATT TTAATTATCT GGTGCATGGT
ATGGGCGTCA TTTTGATGAG CCTGAATATG GCCTCGCTGG AGACGCTTTG GCAGACTAAT
GCCGCGGGCG TCTCGATAGT TATCTCATCA CTGGGCATTG GTCGATTAAG TGTCTTGCTT
TTTGCAGGAT TATTATCCGA TCGCTTTGGT CGCCGCCCTT TTATCATGCT CGGGATGTGC
TGCTATATGG CCTTCTTTTT TGGCATCCTG CACACCAATA ACATCATTAT CGCTTATGTT
TTTGGCTTTC TGGCGGGAAT GGCAAACAGT TTTCTCGATG CAGGCACCTA TCCCAGTTTG
ATGGAAGCTT TTCCACGCTC ACCGGGTACA GCCAATATTT TAATTAAAGC ATTTGTTTCC
AGCGGACAAT TTTTATTACC GCTAATTATC AGCCTGTTAG TGTGGGCTGA ACTGTGGTTC
GGTTGGTCCT TTATGATTGC CGCAGGCATT ATGTTTATTA ACGCTCTGTT TTTATACCGT
TGTACGTTCC CACCCCATCC GGGTCGTCGC TTACCTGTCA TAAAGAAAAC CACCAGCTCT
ACGGAACATC GCTGTTCAAT TATCGATTTA GCCAGTTATA CCTTATATGG CTATATCTCA
ATGGCAACGT TTTATCTGGT TAGCCAGTGG CTGGCACAAT ACGGACAATT TGTTGCAGGC
ATGTCATACA CTATGTCGAT CAAACTACTC AGTATCTACA CCGTGGGTTC GCTGCTTTGT
GTATTTATTA CCGCTCCACT CATTCGTAAT ACCGTTCGCC CAACAACATT ACTGATGCTG
TACACCTTTA TCTCATTTAT CGCCCTGCTC ACCGTCTGCC TGCATCCCAC ATTTTATGTG
GTGATAATAT TTGCTTTCGT CATCGGTTTT ACCTCCGCAG GCGGTGTTGT ACAAATTGGC
CTGACGTTAA TGGCGGAACG TTTTCCCTAC GCTAAAGGAA AAGCAACGGG GATCTATTAC
AGTGCGGGCA GCATTGCAAC ATTTACCATT CCGTTGATTA CGGCTCATCT TTCGCAAAGA
AGTATTGCCG ATATTATGTG GTTCGATACC GCCATCGCTG CCATCGGCTT TATACTGGCA
CTGTTTATTG GCTTACGCAG TCGCAAAGAA ACGCGGCATC ACTCGCTAAA GGAAAATGTC
GCTCCGGGTG GGTAA
|
|---|
| Protein sequence | MKNPYYPTAL GLYFNYLVHG MGVILMSLNM ASLETLWQTN AAGVSIVISS LGIGRLSVLL
FAGLLSDRFG RRPFIMLGMC CYMAFFFGIL HTNNIIIAYV FGFLAGMANS FLDAGTYPSL
MEAFPRSPGT ANILIKAFVS SGQFLLPLII SLLVWAELWF GWSFMIAAGI MFINALFLYR
CTFPPHPGRR LPVIKKTTSS TEHRCSIIDL ASYTLYGYIS MATFYLVSQW LAQYGQFVAG
MSYTMSIKLL SIYTVGSLLC VFITAPLIRN TVRPTTLLML YTFISFIALL TVCLHPTFYV
VIIFAFVIGF TSAGGVVQIG LTLMAERFPY AKGKATGIYY SAGSIATFTI PLITAHLSQR
SIADIMWFDT AIAAIGFILA LFIGLRSRKE TRHHSLKENV APGG
|
|---|
| |