| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1494 |
|---|
| Symbol | fadK |
|---|
| ID | 6143828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 1478190 |
|---|
| End bp | 1479830 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641616372 |
|---|
| Product | short chain acyl-CoA synthetase |
|---|
| Protein accession | YP_001743552 |
|---|
| Protein GI | 170680187 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 0.433242 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTGA CATTAACGTT TAACGAACAA CGTCGTGCGG CGTATCGTCA GCAAGGGCTA
TGGGGCGATG CTTCGCTGGC CGATTACTGG CAGCAGACCG CTCGTGCGAT GCCAGACAAA
ATTGCCGTGG TCGATAATCA TGGTGCATCA TACACCTATA GCGCGCTCGA TCACGCCGCG
AGCTGTCTGG CAAACTGGAT GTTGACGAAG GGTATTGAAT CAGGCGATCG CATCGCATTT
CAACTGCCTG GCTGGTGTGA ATTTACCGTT ATCTATCTTG CCTGCCTGAA AATCGGTGCG
GTTTCCGTAC CGCTGTTGCC TTCCTGGCGG GAAGCAGAAC TAGTATGGGT ACTCAATAAG
TGTCAGGCAA AAATGTTCTT TGCACCGACG TTGTTTAAAC AAACGCGTCC GGTAGATTTA
ATCCTGCCGC TGCAAAATCA GCTTCCACAA CTACAACAAA TTGTCGGCGT GGACAAACTG
GCTCCCGCCA CCTCTTCCCT CTCATTAAGT CAGATTCTCG CCGACAATAC CCCACTGACT
ACGGCGATAA CGACCCACGG CGATGAATTA GCCGCTGTGC TATTTACCTC CGGAACCGAG
GGTCTGCCAA AGGGCGTGAT GCTAACGCAT AACAATATTC TCGCCAGTGA GCGGGCTTAT
TGCGCGCGGC TGAATCTGAC CTGGCAGGAT GTCTTTATGA TGCCTGCGCC ACTTGGTCAC
GCAACGGGCT TTCTGCATGG CGTAACAGCA CCATTTTTAA TTGGTGCTCG CAGCGTGTTG
TTAGATATTT TCACTCCTGC TGCGTGTCTC GCGCTGCTTG AGCAGCAGCG TTGCACCTGT
ATGCTCGGCG CAACGCCGTT TGTCTATGAT CTTTTGAATT TACTAGAGAA ACAGCCCGCA
GACCTTTCAG CGCTGCGTTT CTTTCTTTGT GGCGGTACCA CAATCCCCAA AAAAGTGGCG
CGTGAATGCC AGCAGCGCGG CATTAAATTA TTAAGTGTTT ATGGTTCCAC AGAAAGTTCG
CCGCATGCGG TGGTGAATCT CGATGATCCT TTGTCGCGCT TTATGCACAC CGATGGTTAC
GCTGCCGCAG GTGTAGAGAT TAAAGTGGTC GATGGCGCAC GCAAGACCTT ACCGCCAGGT
TGCGAAGGTG AAGAAGCCTC GCGTGGCCCC AATGTGTTTA TGGGGTATTT TGATGAACCT
GAATTAACCG CCCATGCCCT GGATGAAGAA GGCTGGTATT ACAGCGGCGA TCTCTGCCGC
ATGGATGAGG CTGGCTATAT AAAAATAACC GGGCGCAAGA AAGATATTAT TGTCCGCGGC
GGCGAAAATA TTAGCAGCCG TGAAGTGGAA GATATTTTAT TACAGCATCC TAAAATTCAC
GATGCTTGTG TGGTTGCGAT GCCCGATGAA CGCTTAGGTG AACGTTCATG CGCTTATGTC
GTGCTGAAAG CACCGCATCA TTCATTATCG CTGGAAGATG TAGTGGCATT TTTTAGCCGT
AAACGGGTCG CGAAATATAA ATATCCTGAA CATATCGTGG TAATCGAAAA ACTACCGCGC
ACTGCCTCCG GTAAAATACA AAAATTTTTG TTACGTAAAG ATATTCTTCA ACGGCTGGAA
CAAACATGCG TTGAGGCATA A
|
|---|
| Protein sequence | MKVTLTFNEQ RRAAYRQQGL WGDASLADYW QQTARAMPDK IAVVDNHGAS YTYSALDHAA
SCLANWMLTK GIESGDRIAF QLPGWCEFTV IYLACLKIGA VSVPLLPSWR EAELVWVLNK
CQAKMFFAPT LFKQTRPVDL ILPLQNQLPQ LQQIVGVDKL APATSSLSLS QILADNTPLT
TAITTHGDEL AAVLFTSGTE GLPKGVMLTH NNILASERAY CARLNLTWQD VFMMPAPLGH
ATGFLHGVTA PFLIGARSVL LDIFTPAACL ALLEQQRCTC MLGATPFVYD LLNLLEKQPA
DLSALRFFLC GGTTIPKKVA RECQQRGIKL LSVYGSTESS PHAVVNLDDP LSRFMHTDGY
AAAGVEIKVV DGARKTLPPG CEGEEASRGP NVFMGYFDEP ELTAHALDEE GWYYSGDLCR
MDEAGYIKIT GRKKDIIVRG GENISSREVE DILLQHPKIH DACVVAMPDE RLGERSCAYV
VLKAPHHSLS LEDVVAFFSR KRVAKYKYPE HIVVIEKLPR TASGKIQKFL LRKDILQRLE
QTCVEA
|
|---|
| |