| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1445 |
|---|
| Symbol | astD |
|---|
| ID | 6145919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 1429365 |
|---|
| End bp | 1430843 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641616323 |
|---|
| Product | succinylglutamic semialdehyde dehydrogenase |
|---|
| Protein accession | YP_001743503 |
|---|
| Protein GI | 170679694 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR03240] succinylglutamic semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 0.545801 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTTTAT GGATTAACGG TGACTGGATA ACGGGCCAGG GCGCATCGCG TGTGAAGCGT
AATCCGGTAT CGGGCGAGGT GTTATGGCAG GGCAATGATG CCGATGCCGC TCAGGTCGGG
CTGGCTTGTC GGGCTGCCCG TGCGGCGTTT CCGCGTTGGG CGCGGCTCTC CTTTGGCGAT
CGTCAGGTAA GAGTTGAACG CTTTGCCGCA CTGCTGGAAA GCAATAAAGC CGAATTAACC
GCGATTATTG CCAGAGAAAC GGGTAAGCCG CGCTGGGAAG CGGCAACTGA AGTGACGGCG
ATGATCAATA AAATCGCGAT ATCAATTAAG GCGTATCACG TTCGTACCGG CGAGCAGCGT
AGCGAAATGC CGGACGGCGC GGCAAGCCTG CGCCATCGTC CACACGGCGT GCTGGCGGTG
TTTGGGCCGT ATAATTTCCC CGGTCATTTA CCGAACGGAC ATATCGTTCC GGCATTGCTG
GCAGGTAACA CCATTATCTT TAAACCCAGC GAACTGACAC CGTGGAGTGG CGAAGCGGTA
ATGCGTTTAT GGCAGCAGGC TGGCTTGCCG CCGGGCGTGC TGAACCTGGT GCAGGGCGGG
CGCGAAACCG GTCAGGCGCT GAGTGCACTT GAGGATCTCG ACGGCTTGCT GTTTACCGGT
AGCGCCAATA CCGGCTACCA GTTGCATCGC CAGCTCTCCG GTCAGCCGGA GAAAATTCTC
GCCCTTGAGA TGGGCGGTAA TAATCCGCTA ATTATCGATG AGGCGGCGGA TATCGATGCC
GCTGTCCATC TGACCATTCA GTCGGCGTTT GTCACAGCCG GGCAACGCTG CACCTGCGCT
CGCCGTTTAT TGCTGAAAAG CGGGGCGCAG GGCGATGCAT TTCTTGCTCG CCTGGTTGCC
GTCAGCCAGC GGTTAACGCC GGGCACTTGG GATGACGAAC CGCAGCCATT TATTGGTGGG
CTGATTTCTG AGCAGGCCGC ACAGCAGGTG GTTACTGCCT GGCATGAACT GGAGGCGATG
GGCGGACGGA CCCTGCTTGC GCCGCGCTTA TTACAAGCAG GGACATCGTT GCTGACGCCG
GGGATCATTG AAATGACAGG CGTTACTGGC GTGCCGGATG AAGAAGTGTT TGGGCCGCTA
TTGCGCGTCT GGCGTTATGA CAATTTCGAT GAAGCGATTC GAATGGCGAA TAACACTCGC
TTCGGCCTCT CTTGCGGTCT GGTTTCCCCC GAGCGGGAAA AATTCGATCA ACTGTTGCTG
GAGGCACGGG CGGGGATTGT TAACTGGAAC AAACCGCTTA CCGGTGCTGC CAGTACCGCG
CCATTCGGCG GCATTGGCGC TTCCGGCAAT CATCGCCCCA GCGCCTGGTA TGCCGCAGAT
TATTGTGCCT GGCCGATGGC AAGCCTGGAG TCGGACTCGT TAACGTTGCC AGCAACGCTT
AACCCCGGGC TGGATTTTTC CGATGAGGTG GTGCGATGA
|
|---|
| Protein sequence | MTLWINGDWI TGQGASRVKR NPVSGEVLWQ GNDADAAQVG LACRAARAAF PRWARLSFGD
RQVRVERFAA LLESNKAELT AIIARETGKP RWEAATEVTA MINKIAISIK AYHVRTGEQR
SEMPDGAASL RHRPHGVLAV FGPYNFPGHL PNGHIVPALL AGNTIIFKPS ELTPWSGEAV
MRLWQQAGLP PGVLNLVQGG RETGQALSAL EDLDGLLFTG SANTGYQLHR QLSGQPEKIL
ALEMGGNNPL IIDEAADIDA AVHLTIQSAF VTAGQRCTCA RRLLLKSGAQ GDAFLARLVA
VSQRLTPGTW DDEPQPFIGG LISEQAAQQV VTAWHELEAM GGRTLLAPRL LQAGTSLLTP
GIIEMTGVTG VPDEEVFGPL LRVWRYDNFD EAIRMANNTR FGLSCGLVSP EREKFDQLLL
EARAGIVNWN KPLTGAASTA PFGGIGASGN HRPSAWYAAD YCAWPMASLE SDSLTLPATL
NPGLDFSDEV VR
|
|---|
| |