| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1428 |
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| Symbol | topB |
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| ID | 6146168 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 1413353 |
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| End bp | 1415308 |
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| Gene Length | 1956 bp |
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| Protein Length | 651 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641616306 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_001743486 |
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| Protein GI | 170682846 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0037378 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.804884 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGTTGT TTATTGCCGA AAAACCGAGT CTGGCGCGCG CCATTGCTGA TGTCCTGCCT
AAACCGCACC GGAAAGGCGA TGGCTTTATC GAGTGCGGTA ATGGTCAGGT GGTGACCTGG
TGTATCGGTC ACCTGCTTGA GCAGGCGCAG CCAGACGCCT ACGACAGCCG CTATGCGCGC
TGGAATCTTG CGGATTTGCC AATTGTCCCG GAAAAGTGGC AATTACAGCC CCGACCCTCC
GTGACTAAAC AACTTAATGT CATCAAACGC TTCCTGCATG AAGCCAGCGA AATCGTTCAC
GCCGGAGACC CGGATCGCGA AGGGCAACTG CTGGTGGATG AAGTGCTGGA CTACCTGCAA
CTGGCACCGG AAAAGCGCCA GCAGGTACAG CGTTGTTTGA TAAACGACCT GAACCCGCAG
GCGGTTGAGC GGGCGATCGA TCGTCTTCGC TCCAATAGCG AGTTTGTACC GCTGTGCGTT
TCTGCACTGG CGCGAGCCCG AGCTGACTGG CTGTACGGCA TCAATATGAC CCGCGCTTAC
ACCATTCTCG GTCGCAATGC CGGTTATCAG GGCGTACTTT CCGTGGGACG CGTGCAGACG
CCCGTACTCG GACTGGTGGT GCGCCGCGAC GAAGAGATTG AAAACTTCGT GGCGAAAGAT
TTCTTTGAAG TCAAAGCACA TATCGTGACA CCTGCCGATG AGCGGTTTAC CGCTATCTGG
CAACCGAGCG AAGCGTGTGA ACCGTACCAG GATGAAGAAG GGCGCTTGTT ACATCGTCCA
CTGGCGGAGC ATGTGGTTAA CCGCATTAGT GGTCAACCAG CTATTGTCAC CAGCTATAAC
GATAAACGGG AATCAGAATC CGCGCCGCTT CCTTTTTCGC TTTCGGCGTT GCAGATTGAA
GCGGCTAAAC GTTTTGGTCT GAGCGCGCAG AACGTGCTTG ATATCTGCCA GAAGCTGTAC
GAAACGCACA AGCTAATCAC TTATCCGCGT TCCGATTGCC GCTATTTGCC AGAAGAACAT
TTTGCCGGAC GCCACGCGGT GATGAATGCT ATCAGCGTTC ATGCACCGGA TCTGTTGCCG
CAGCCAGTGG TAGATCCAGA TATACGCAAC CGCTGTTGGG ATGACAAAAA GGTCGATGCG
CACCACGCCA TCATTCCGAC CGCACGGAGT TCTGCGATCA ACCTGACGGA GAACGAAGCG
AAGGTCTATA ACCTGATTGC CCGTCAGTAC TTGATGCAGT TCTGCCCGGA TGCGGTGTTC
CGCAAGTGTG TTATCGAACT GGACATTGCC AAAGGCAAAT TTGTCGCTAA AGCCCGTTTT
CTTGCTGAAG CAGGCTGGCG CACGCTGTTA GGCAGCAAAG AGCGCGATGA AGAAAACGAC
GGCATGCCGC TGCCTGTGGT GGCGAAAGGC GATGAATTGT TGTGCGAAAA AGGTGAAGTG
GTAGAGCGGC AAACCCAGCC GCCGCGCCAT TTTACCGATG CAACACTGCT TTCGGCGATG
ACCGGGATCG CACGCTTTGT GCAGGACAAA GATCTGAAAA AGATCCTTCG TGCGACCGAT
GGTCTGGGGA CAGAAGCAAC CCGTGCCGGG ATTATTGAAC TGTTGTTCAA GCGTGGTTTC
CTGACCAAAA AAGGGCGCTA TATCCACTCC ACCGACGCCG GAAAAGCGCT ATTCCATTCG
CTGCCAGAAA TGGCGACGCG ACCGGACATG ACCGCGCACT GGGAATCGGT GCTGACGCAA
ATCAGTGAAA AGCAGTGTCG CTATCAGGAC TTTATGCAGC CGCTGGTGGG GACATTGTAC
CAGTTGATTG ATCAGGCAAA GCGCACGTCG GTAAGGCAGT TTCGGGGAAT AATGGCTCCC
GGCGGTGGAG AAGGGAAGAA AAAGGATTCG CCACGCAAGA GAGCGCCGAA AAAAAGCCCG
TCATCAGAAG AGGCGGGCAA TGGAGTGATA ATATAA
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| Protein sequence | MRLFIAEKPS LARAIADVLP KPHRKGDGFI ECGNGQVVTW CIGHLLEQAQ PDAYDSRYAR
WNLADLPIVP EKWQLQPRPS VTKQLNVIKR FLHEASEIVH AGDPDREGQL LVDEVLDYLQ
LAPEKRQQVQ RCLINDLNPQ AVERAIDRLR SNSEFVPLCV SALARARADW LYGINMTRAY
TILGRNAGYQ GVLSVGRVQT PVLGLVVRRD EEIENFVAKD FFEVKAHIVT PADERFTAIW
QPSEACEPYQ DEEGRLLHRP LAEHVVNRIS GQPAIVTSYN DKRESESAPL PFSLSALQIE
AAKRFGLSAQ NVLDICQKLY ETHKLITYPR SDCRYLPEEH FAGRHAVMNA ISVHAPDLLP
QPVVDPDIRN RCWDDKKVDA HHAIIPTARS SAINLTENEA KVYNLIARQY LMQFCPDAVF
RKCVIELDIA KGKFVAKARF LAEAGWRTLL GSKERDEEND GMPLPVVAKG DELLCEKGEV
VERQTQPPRH FTDATLLSAM TGIARFVQDK DLKKILRATD GLGTEATRAG IIELLFKRGF
LTKKGRYIHS TDAGKALFHS LPEMATRPDM TAHWESVLTQ ISEKQCRYQD FMQPLVGTLY
QLIDQAKRTS VRQFRGIMAP GGGEGKKKDS PRKRAPKKSP SSEEAGNGVI I
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