| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1373 |
|---|
| Symbol | |
|---|
| ID | 6143788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 1360068 |
|---|
| End bp | 1361666 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641616251 |
|---|
| Product | cyclic diguanylate phosphodiesterase domain-containing protein |
|---|
| Protein accession | YP_001743431 |
|---|
| Protein GI | 170681526 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.295034 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.0183228 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAG CACAACGGAT CATTAAAACC TATCGCCGTA ATCGAATGAT TGTTTGTACG
ATTTGCGCCC TCGTTACGCT CGCTTCGACC CTGAGCGTGC GATTTATTTC ACAGCGTAAC
TTAAATCAAC AACGGGTAGT ACAATTCGCC AATCACGCTG TAGAGGAATT AGATAAAGTA
CTGCTTCCCC TACAGGCAGG TAGCGAAGTC TTGCTTCCGC TGATTGGTCT GCCCTGCTCT
GTCGCCCATT TGCCATTACG TAAACAGGCG GCAAAACTCC AAACTGTGCG ATCCATTGGC
CTGGTGCAAG ACGGCACACT TTATTGCTCC AGCATTTTTG GTTATCGCAA TGTGCCCGTC
GTGGACATTC TGGCTGAACT TCCTGCACCG CAACCACTTT TACGCCTGAC GATCGACCGT
GCCCTGATTA AAGGCAGTCC GGTTTTGATT CAGTGGACGC CAGCAGCGGG CAGTAGCAAA
GCTGGGGTCA TGGAGATGAT TAACATCGAC TTACTGGCGG CAATGCTGCT TGAGCCACAA
CTGCCGCAAA TCAGTAGCGC CAGCCTGACG GTGGACGATC GGCATTTGCT CTATGGTAAT
GGGCTGGTAG ATTCCCTTCC GCAACCTGAA AACAATGAAA ACTACCAGGT TTCTTCGCAA
CGCTTTCCTT TTACCATTAA CGTTAATGGT CCGGGGGCTA CGGCGCTGGC ATGGCACTAT
CTTCCAACAC AATTACCGCT GGCGGTGCTG CTAAGTTTAC TGGTGGGCTA CATCGCCTGG
CTGGCGACCG CTTACCGGAT GAGCTTTTCC CGCGAAATCA ATCTGGGCCT GGCGCAACAT
GAGTTCGAAT TGTTCTGTCA GCCTTTGCTT AATGCGCGCA GCCAGCAATG TATTGGTGTA
GAGATTTTGC TTCGCTGGAA CAATCCGCGT CAGGGCTGGA TTTCACCGGA TGTGTTTATT
CCTATCGCGG AAGAACATCA TTTAATTGTG CCACTGACCC GCTATGTGAT GGCAGAAACC
ATTCGTCAGC GCCATGTTTT CCCGATGAGT AGTCAGTTTC ATGTTGGCAT TAACGTCGCA
CCCAGCCATT TTCGCCGTGG TGTGCTGATA AAAGATCTCA ATCAGTACTG GTTTAGCGCT
CACCCGATTC AGCAACTGAT CCTCGAAATC ACCGAACGCG ATGCCTTACT GGATGTTGAT
TATCGGATTG CCCGCGAGCT ACATCGTAAA AACGTCAAAC TGGCGATTGA TGACTTCGGC
ACCGGCAACA GTTCATTTTC CTGGCTTGAA ACATTACGTC CTGACGTGCT GAAAATTGAT
AAGTCATTTA CCGCAGCTAT AGGTTCTGAC GCGGTTAACT CGACGGTGAC CGATATCATC
ATCGCTCTGG GGCAAAGACT GAATATTGAA CTGGTGGCGG AGGGTGTGGA AACACAAGAA
CAGGCGAAGT ATTTGCGCCG TCATGGGGTG CATATTTTGC AAGGGTATTT GTACGCACAG
CCGATGCCGC TACGTGATTT TCCCAAATGG CTGGCGGGCA GCCAACCGCC GCCCGCCCGG
CATAATGGAC ATATCACGCC CGTTATGCCG TTACGTTAA
|
|---|
| Protein sequence | MQKAQRIIKT YRRNRMIVCT ICALVTLAST LSVRFISQRN LNQQRVVQFA NHAVEELDKV
LLPLQAGSEV LLPLIGLPCS VAHLPLRKQA AKLQTVRSIG LVQDGTLYCS SIFGYRNVPV
VDILAELPAP QPLLRLTIDR ALIKGSPVLI QWTPAAGSSK AGVMEMINID LLAAMLLEPQ
LPQISSASLT VDDRHLLYGN GLVDSLPQPE NNENYQVSSQ RFPFTINVNG PGATALAWHY
LPTQLPLAVL LSLLVGYIAW LATAYRMSFS REINLGLAQH EFELFCQPLL NARSQQCIGV
EILLRWNNPR QGWISPDVFI PIAEEHHLIV PLTRYVMAET IRQRHVFPMS SQFHVGINVA
PSHFRRGVLI KDLNQYWFSA HPIQQLILEI TERDALLDVD YRIARELHRK NVKLAIDDFG
TGNSSFSWLE TLRPDVLKID KSFTAAIGSD AVNSTVTDII IALGQRLNIE LVAEGVETQE
QAKYLRRHGV HILQGYLYAQ PMPLRDFPKW LAGSQPPPAR HNGHITPVMP LR
|
|---|
| |