Gene EcSMS35_1357 details

Gene Information

• Locus tag: EcSMS35_1357
• Symbol: prc
• ID: 6147108
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Escherichia coli SMS-3-5
• Kingdom: Bacteria
• Replicon accession: NC_010498
• Strand: +
• Start bp: 1345283
• End bp: 1347325
• Gene Length: 2043 bp
• Protein Length: 680 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 641616235
• Product: carboxy-terminal protease
• Protein accession: YP_001743415
• Protein GI: 170681936
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0793] Periplasmic protease
• TIGRFAM ID: [TIGR00225] C-terminal peptidase (prc)

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.00000834708
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 39
• Fosmid unclonability p-value: 0.174046
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTTTTTTA GGCTTACCGC GTTAGCTGGC CTGCTTGCAA TAGCAGGCCA GACCTTCGCT 
GTAGAAGATA TCACGCGTGC TGATCAAATT CCGGTATTAA AGGAAGAGAC GCAGCATGCG 
ACGGTAAGTG AGCGCGTAAC GTCGCGCTTC ACCCGTTCTC ATTATCGCCA GTTCGACCTC 
GATCAGGCAT TTTCGGCCAA AATCTTTGAC CGCTACCTGA ATCTGCTCGA TTACAGCCAC 
AACGTGCTGT TGGCAAGCGA TGTTGAACAG TTCGCGAAAA AGAAAACCGA GTTAGGCGAT 
GAACTGCGTT CAGGCAAACT CGACGTTTTC TACGATCTCT ACAATCTGGC GCAAAAGCGT 
CGTTTTGAAC GTTACCAGTA CGCTTTGTCG GTACTGGAAA AGCCGATGGA TTTCACCGGC 
AACGACACTT ATAACCTTGA CCGCAGCAAA GCGCCCTGGC CGAAAAACGA GGCTGAGTTG 
AACGCGCTGT GGGACAGTAA AGTCAAATTC GACGAGTTAA GCCTGAAGCT GGCAGGAAAA 
ACGGATAAAG AAATTCGTGA AACCCTGACT CGCCGCTACA AATTTGCCAT TCGTCGTCTG 
GCGCAAACCA ACAGCGAAGA TGTTTTCTCG CTGGCAATGA CGGCGTTTGC GCGTGAAATC 
GACCCGCATA CCAACTATCT TTCCCCGCGA AATACCGAAC AGTTCAACAC TGAAATGAGT 
TTGTCGCTGG AAGGTATTGG CGCAGTGCTG CAAATGGATG ATGACTACAC CGTTATCAAT 
TCGATGGTGG CAGGTGGCCC GGCAGCGAAG AGTAAAGCTA TCAGCGTTGG TGACAAAATT 
GTCGGTGTTG GTCAAACAGG CAAGCCGATG GTTGACGTGA TTGGTTGGCG TCTTGATGAT 
GTGGTTGCCT TAATTAAAGG GCCGAAGGGC AGTAAAGTTC GTCTGGAAAT TTTACCTGCT 
GGTAAAGGGA CCAAGACCCG TACTGTAACG TTGACCCGTG AACGTATTCG TCTCGAAGAC 
CGCGCGGTTA AAATGTCGGT GAAGACCGTC GGTAAAGAGA AAGTCGGCGT GCTGGATATT 
CCGGGCTTCT ATGTGGGTTT GACAGATGAT GTCAAAGTAC AGCTGCAGAA ACTGGAAAAA 
CAGAATGTCA GCAGCGTCAT CATCGACCTG CGTAGCAATG GTGGTGGGGC GCTGACCGAA 
GCGGTATCGC TCTCCGGTCT GTTTATTCCA TCCGGCCCGA TTGTTCAGGT CCGTGATAAC 
AACGGTAAAG TTCGTGAAGA CAGCGATACC GACGGACAGG TCTTCTATAA AGGCCCGCTG 
GTGGTACTGG TTGACCGTTT CAGTGCTTCG GCTTCAGAAA TCTTTGCCGC GGCAATGCAG 
GATTACGGTC GTGCGCTGGT TGTGGGTGAA CCGACGTTTG GTAAAGGCAC CGTTCAGCAA 
TACCGTTCAT TGAACCGTAT CTACGATCAG ATGTTACGTC CTGAATGGCC AGCGCTGGGA 
TCTGTGCAGT ACACGATCCA GAAATTCTAT CGCGTTAACG GCGGCAGTAC GCAACGTAAA 
GGCGTAACGC CAGACATCAT CATGCCGACG GGTAATGAAG AAACGGAAAC GGGTGAGAAA 
TTCGAAGATA ACGCGCTGCC GTGGGATAGC ATTGATGCCG CGACTTATGT GAAATCAGGA 
GATTTAACGG CCTTTGAACC GGAGCTGCTG AAGGAACATA ATGCGCGTAT CGCGAAAGAT 
CCTGAGTTCC AGAACATCAT GAAGGATATC GCACGCTTCA ACGCTATGAA GGACAAGCGC 
AATATCGTTT CTCTGAATTA CGCTGTGCGT GAGAAAGAGA ATAATGAAGA TGATGCGACG 
CGTCTGGCGC GTTTGAACGA ACGCTTTAAA CGCGAAGGTA AACCGGAGTT GAAGAAACTG 
GATGATCTAC CGAAAGATTA CCAGGAGCCA GATCCTTATC TGGATGAGAC GGTGAATATC 
GCACTCGATC TGGCGAAGCT TGAAAAAGCC AGACCCGCGG AACAACCCGC TCCCGTCAAG 
TAA 

 

Protein sequence

MFFRLTALAG LLAIAGQTFA VEDITRADQI PVLKEETQHA TVSERVTSRF TRSHYRQFDL 
DQAFSAKIFD RYLNLLDYSH NVLLASDVEQ FAKKKTELGD ELRSGKLDVF YDLYNLAQKR 
RFERYQYALS VLEKPMDFTG NDTYNLDRSK APWPKNEAEL NALWDSKVKF DELSLKLAGK 
TDKEIRETLT RRYKFAIRRL AQTNSEDVFS LAMTAFAREI DPHTNYLSPR NTEQFNTEMS 
LSLEGIGAVL QMDDDYTVIN SMVAGGPAAK SKAISVGDKI VGVGQTGKPM VDVIGWRLDD 
VVALIKGPKG SKVRLEILPA GKGTKTRTVT LTRERIRLED RAVKMSVKTV GKEKVGVLDI 
PGFYVGLTDD VKVQLQKLEK QNVSSVIIDL RSNGGGALTE AVSLSGLFIP SGPIVQVRDN 
NGKVREDSDT DGQVFYKGPL VVLVDRFSAS ASEIFAAAMQ DYGRALVVGE PTFGKGTVQQ 
YRSLNRIYDQ MLRPEWPALG SVQYTIQKFY RVNGGSTQRK GVTPDIIMPT GNEETETGEK 
FEDNALPWDS IDAATYVKSG DLTAFEPELL KEHNARIAKD PEFQNIMKDI ARFNAMKDKR 
NIVSLNYAVR EKENNEDDAT RLARLNERFK REGKPELKKL DDLPKDYQEP DPYLDETVNI 
ALDLAKLEKA RPAEQPAPVK