| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1352 |
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| Symbol | yebU |
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| ID | 6147046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1338431 |
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| End bp | 1339876 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641616230 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_001743410 |
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| Protein GI | 170683942 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.312061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.0948873 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTCGTGG CCCAACACAC CGTTTATTTC CCGGACGCCT TTCTGACACA AATGCGCGAA
GCTATGCCTT CGACGCTCTC TTTTGATGAT TTTCTTGCCG CCTGTCAGCG CCCGTTGCGC
CGCAGCATTC GCGTTAATAC GCTGAAAATC TCCGTTGCTG ATTTCCTGCA ATTAACCGCT
CCTTATGGCT GGACGCTTAC GCCAATTCCG TGGTGTGAAG AAGGTTTCTG GATTGAACGC
GACGATGAAG ATGCATTGCC ATTGGGTAGT ACCGCCGAGC ATTTAAGCGG CCTGTTTTAT
ATTCAGGAAG CCAGTTCAAT GTTGCCCGTT GCCGCCTTGT TTGCTGACGG TAATGCACCA
CAGCGGGTGA TGGATGTCGC TGCCGCGCCC GGCTCCAAAA CGACGCAAAT TGCCGCGCGG
ATGAATAACG AAGGGGCGAT CCTTGCCAAT GAGTTTTCCG CCAGTCGGGT AAAAGTGTTA
CATGCCAATA TCAGCCGCTG TGGCATCAGT AATGTTGCGC TCACACATTT TGATGGCCGC
GTGTTTGGTG CGGCAGTGCC AGAAATGTTC GATGCCATTT TGCTGGACGC TCCCTGCTCC
GGCGAAGGCG TGGTGCGTAA AGATCCCGAT GCGCTAAAAA ACTGGTCACC AGAAAGCAAT
CAGGAAATCG CAGCGACCCA ACGGGAACTG ATCGACAGCG CCTTTCATGC ATTACGCCCT
GGCGGTACGC TGGTTTACTC GACCTGTACC TTAAACAGGG AAGAAAACGA AGCCGTTTGC
CTGTGGCTGA AAGAGACTTA CCCCGACGCA GTAGAGTTTT TACCGCTTGG CGATCTCTTC
CCTGGTGCAA ATAAGGCGCT GACCGAAGAA GGCTTTTTGC ATGTTTTCCC ACAAATTTAC
GACTGCGAAG GCTTCTTCGT TGCTCGTCTG CGTAAAACTC AGGCGATCCC CGTCTTACCC
GCCCCAAAAT ACAAAGTGGG CAATTTCCCG TTTAGCCCGG TGAAAGATCG CGAAGCCGGT
CAAATTCGTC AGGCGGCTGC AGGTGTTGGC TTAAACTGGG ATGGAAACCT GCGACTCTGG
CAACGCGACA AAGAACTGTG GTTGTTCCCG GTAGGCATTG AAGCCCTGAT CGGTAAAGTC
CGATTTTCTC GGTTGGGGAT TAAACTTGCC GAAACGCATA ACAAAGGTTA TCGCTGGCAG
CATGAAGCGG TTATTGCCCT TGCCTCCCCC GACAATGTGA ACGCTTTTGA ACTGACACCG
CAGGAAGCGG AAGAGTGGTA TCGCGGGCGC GATGTTTACC CGCAAGCCGC GCCAGTAGCG
GATGATGTAT TGGTTACTTT CCAGCATCAG CCGATTGGTT TAGCCAAACG AATTGGTTCG
CGACTGAAAA ACAGCTACCC GCGTGAACTG GTGCGAGACG GGAAACTTTT TACCGGTAAC
GCCTGA
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| Protein sequence | MLVAQHTVYF PDAFLTQMRE AMPSTLSFDD FLAACQRPLR RSIRVNTLKI SVADFLQLTA
PYGWTLTPIP WCEEGFWIER DDEDALPLGS TAEHLSGLFY IQEASSMLPV AALFADGNAP
QRVMDVAAAP GSKTTQIAAR MNNEGAILAN EFSASRVKVL HANISRCGIS NVALTHFDGR
VFGAAVPEMF DAILLDAPCS GEGVVRKDPD ALKNWSPESN QEIAATQREL IDSAFHALRP
GGTLVYSTCT LNREENEAVC LWLKETYPDA VEFLPLGDLF PGANKALTEE GFLHVFPQIY
DCEGFFVARL RKTQAIPVLP APKYKVGNFP FSPVKDREAG QIRQAAAGVG LNWDGNLRLW
QRDKELWLFP VGIEALIGKV RFSRLGIKLA ETHNKGYRWQ HEAVIALASP DNVNAFELTP
QEAEEWYRGR DVYPQAAPVA DDVLVTFQHQ PIGLAKRIGS RLKNSYPREL VRDGKLFTGN
A
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