Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1290 |
Symbol | uspC |
ID | 6143040 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | - |
Start bp | 1279335 |
End bp | 1279763 |
Gene Length | 429 bp |
Protein Length | 142 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641616168 |
Product | universal stress protein UspC |
Protein accession | YP_001743348 |
Protein GI | 170684295 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000158426 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.0000000604455 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCTATA GCAATATTCT TGTCGCTGTT GCGGTTACAC CGGAAAGTCA GCAACTGCTG GCAAAAGCGG TATCTATCGC CAGGCCAGTA AAGGGACACA TCAGTTTAAT TACTCTCGCT TCCGACCCGG AAATGTACAA TCAATTAGCC GCGCCGATGC TTGAAGATTT ACGCAGCGTG ATGCAGGAAG AAACGCAAAG CTTTCTTGAT AAGTTAATTC AGGATGCGGG GTATCCCGTT GACAAGACGT TTATTGCCTA CGGTGAGTTA AGCGAACATA TTCTGGAAGT ATGTCACAAA CATCATTTCG ATTTGGTGAT TTGCGGTAAT CACAATCACA GTTTCTTTTC GCGAGCATCC TGCTCGGCGA AAAGAGTGAT TGCCTCAAGT GAGGTCGATG TGCTGTTAGT TCCACTTACG GGTGATTAA
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Protein sequence | MSYSNILVAV AVTPESQQLL AKAVSIARPV KGHISLITLA SDPEMYNQLA APMLEDLRSV MQEETQSFLD KLIQDAGYPV DKTFIAYGEL SEHILEVCHK HHFDLVICGN HNHSFFSRAS CSAKRVIASS EVDVLLVPLT GD
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