Gene EcSMS35_1290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_1290 
SymboluspC 
ID6143040 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp1279335 
End bp1279763 
Gene Length429 bp 
Protein Length142 aa 
Translation table11 
GC content45% 
IMG OID641616168 
Productuniversal stress protein UspC 
Protein accessionYP_001743348 
Protein GI170684295 
COG category[T] Signal transduction mechanisms 
COG ID[COG0589] Universal stress protein UspA and related nucleotide-binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000158426 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0000000604455 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGCTATA GCAATATTCT TGTCGCTGTT GCGGTTACAC CGGAAAGTCA GCAACTGCTG 
GCAAAAGCGG TATCTATCGC CAGGCCAGTA AAGGGACACA TCAGTTTAAT TACTCTCGCT
TCCGACCCGG AAATGTACAA TCAATTAGCC GCGCCGATGC TTGAAGATTT ACGCAGCGTG
ATGCAGGAAG AAACGCAAAG CTTTCTTGAT AAGTTAATTC AGGATGCGGG GTATCCCGTT
GACAAGACGT TTATTGCCTA CGGTGAGTTA AGCGAACATA TTCTGGAAGT ATGTCACAAA
CATCATTTCG ATTTGGTGAT TTGCGGTAAT CACAATCACA GTTTCTTTTC GCGAGCATCC
TGCTCGGCGA AAAGAGTGAT TGCCTCAAGT GAGGTCGATG TGCTGTTAGT TCCACTTACG
GGTGATTAA
 
Protein sequence
MSYSNILVAV AVTPESQQLL AKAVSIARPV KGHISLITLA SDPEMYNQLA APMLEDLRSV 
MQEETQSFLD KLIQDAGYPV DKTFIAYGEL SEHILEVCHK HHFDLVICGN HNHSFFSRAS
CSAKRVIASS EVDVLLVPLT GD