| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1144 |
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| Symbol | shiA |
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| ID | 6144011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 1162007 |
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| End bp | 1163323 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641616022 |
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| Product | shikimate transporter |
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| Protein accession | YP_001743211 |
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| Protein GI | 170680503 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
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| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.000733491 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000000475287 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACTCCA CGCTCATCTC CACTCGTCCC GATGAAGGGA CGCTTTCGTT AAGTCGCGCC
CGACGAGCTG CGTTAGGCAG CTTCGCTGGT GCCGTCGTCG ACTGGTATGA TTTTTTACTC
TATGGCATCA CCGCCGCACT GGTGTTTAAT CGCGAGTTTT TCCCGCAAGT AAGCCCGGCG
ATGGGAACGC TCGCCGCATT TGCCACCTTT GGCGTCGGAT TCCTTTTCCG TCCGCTCGGC
GGTGTCATTT TCGGTCACTT TGGCGACCGA CTGGGACGTA AGCGCATGTT AATGCTGACC
GTCTGGATGA TGGGCATCGC GACAGCCTTG ATTGGTATTC TTCCTTCATT CTCGACCATT
GGGTGGTGGG CACCTATTTT GCTGGTGACA CTGCGTGCCA TTCAGGGATT TGCCGTCGGC
GGCGAATGGG GAGGCGCGGC GTTGCTTTCC GTTGAAAGTG CACCGAAAAA TAAAAAAGCC
TTTTACAGTA GCGGTGTACA AGTTGGCTAC GGTGTAGGTT TACTGCTTTC AACCGGACTG
GTTTCATTGA TCAGTATGAT GACGACTGAC GAACAGTTTT TAAGCTGGGG CTGGCGCATT
CCTTTCCTGT TTAGCATCGT ACTGGTACTG GGAGCATTGT GGGTGCGCAA TGGCATGGAG
GAGTCCGCGG AATTTGAACA ACAGCAACAT TATCAAGCTG CCGCGAAAAA ACGCATCCCG
GTTATCGAAG CGCTGTTACG ACATCCCGGT GCTTTCCTGA AGATTATTGC GCTACGACTG
TGCGAATTGC TGACGATGTA CATCGTTACT GCCTTTGCAC TTAATTATTC AACCCAGAAT
ATGGGGTTAC CGCGCGAACT TTTCCTCAAT ATTGGTTTGC TGGTAGGTGG ATTAAGCTGC
TTGACAATTC CCTGTTTTGC CTGGCTTGCC GATCGTTTTG GTCGCCGCAG GGTTTATATC
ACAGGTGCGT TAATCGGAAC GTTGAGCGCA TTTCCTTTCT TTATGGCGCT TGAAGCACAA
TCTATTTTCT GGATAGTTTT CTTCTCCATA ATGCTGGCAA ACATTGCGCA TGACATGGTG
GTGTGTGTGC AACAACCGAT GTTTACCGAA ATGTTTGGTG CCAGTTATCG CTATAGTGGT
GCTGGAGTCG GTTATCAGGT CGCCAGTGTG GTTGGCGGTG GATTTACACC TTTTATTGCC
GCTGCACTCA TCACTTACTT TGCCGGGAAC TGGCATAGCG TCGCCATTTA TTTGCTGGCT
GGATGTCTGA TTTCCGCAAT GACCGCTTTG TTGATGAAAG ACAATCAACG CGCTTGA
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| Protein sequence | MDSTLISTRP DEGTLSLSRA RRAALGSFAG AVVDWYDFLL YGITAALVFN REFFPQVSPA
MGTLAAFATF GVGFLFRPLG GVIFGHFGDR LGRKRMLMLT VWMMGIATAL IGILPSFSTI
GWWAPILLVT LRAIQGFAVG GEWGGAALLS VESAPKNKKA FYSSGVQVGY GVGLLLSTGL
VSLISMMTTD EQFLSWGWRI PFLFSIVLVL GALWVRNGME ESAEFEQQQH YQAAAKKRIP
VIEALLRHPG AFLKIIALRL CELLTMYIVT AFALNYSTQN MGLPRELFLN IGLLVGGLSC
LTIPCFAWLA DRFGRRRVYI TGALIGTLSA FPFFMALEAQ SIFWIVFFSI MLANIAHDMV
VCVQQPMFTE MFGASYRYSG AGVGYQVASV VGGGFTPFIA AALITYFAGN WHSVAIYLLA
GCLISAMTAL LMKDNQRA
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