| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1076 |
|---|
| Symbol | |
|---|
| ID | 6143326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 1090470 |
|---|
| End bp | 1090676 |
|---|
| Gene Length | 207 bp |
|---|
| Protein Length | 68 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641615963 |
|---|
| Product | prophage CP4-57 regulatory protein AlpA |
|---|
| Protein accession | YP_001743155 |
|---|
| Protein GI | 170682818 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG3311] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 0.154592 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACCC CAGTTTCGCT GATGGATGAC CAGATGGTCG ACATGGCGTT TATCACTCAA
CTGACCGGCC TAACCGATAA GTGGTTTGAC AAACTCATCA AAGATGGGGG CTTTCCTGCG
CCCATCAAAA TGGGGCGCAG CTCCCGCTGG CTGAAAAGTG AAGTGGAAGC CTGGCTGCAG
GCGCGTATTG CACAGTCCCG TCCGTAA
|
|---|
| Protein sequence | MATPVSLMDD QMVDMAFITQ LTGLTDKWFD KLIKDGGFPA PIKMGRSSRW LKSEVEAWLQ
ARIAQSRP
|
|---|
| |