| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_1016 |
|---|
| Symbol | wzxC |
|---|
| ID | 6146636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 1035406 |
|---|
| End bp | 1036884 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641615903 |
|---|
| Product | colanic acid exporter |
|---|
| Protein accession | YP_001743095 |
|---|
| Protein GI | 170681740 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.6233 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTAC GTGAAAAAAC CATCAGCGGC GCGAAGTGGT CGGCGATTGC CACGGTAATC
ATTATCGGCC TCGGGCTGGT GCAGATGACC GTGCTGGCGC GGATTATCGA CAACCACCAG
TTCGGCCTGC TTACCGTGTC GCTGGTGATT ATCGCGCTGG CAGATACGCT TTCTGACTTC
GGTATCGCTA ACTCGATTAT TCAGCGAAAA GAAATCAGTC ACCTGGAACT TACCACGTTG
TACTGGCTGA ACGTCGGGCT GGGGCTTGTG GTGTGTGTGG CGGTGTTTTT GTTGAGTGAT
CTCATTGGTG ACGTGCTGAA CAACCCGGAC CTGGCACCGT TGATTAAAAC ATTGTCGCTG
GCGTTTGTGG TGATCCCCCA CGGGCAGCAG TTCCGCGCGT TGATGCAAAA AGAGCTGGAG
TTCAACAAAA TCGGCATGAT CGAAACCAGC GCGGTGCTGG CGGGCTTTAC TTTTACGGTG
GTTAGCGCCC ATTTCTGGCC ACTGGCGATG ACCGCGATCC TCGGTTATCT GGTCAATAGT
GCGGTAAGAA CGCTGCTGTT TGGCTACTTT GGTCGCAAAA TTTATCGCCC CGGTCTGCAT
TTCTCGCTGG CGTCGGTGGC ACCGAACTTA CGCTTTGGTG CCTGGCTGAC GGCGGACAGC
ATCATCAACT ATCTCAATAC CAACCTTTCA ACGCTGGTGC TGGCGCGTAT TCTCGGCGCG
GGCGTGGCAG GGGGATACAA CCTGGCGTAC AACGTGGCCG TTGTGCCGCC GATGAAGCTG
AACCCAATCA TCACCCGCGT GTTGTTTCCG GCATTTGCCA AAATTCAGGA CGACACCGAA
AAGCTGCGCG TTAACTTCTA CAAGCTGCTG TCGGTAGTGG GGATTATCAA CTTTCCGGCG
CTGCTGGGGC TGATGGTGGT GTCGAATAAC TTTGTACCGC TGGTCTTTGG TGAGAAGTGG
AACAGCATTA TTCCGGTGCT GCAATTGCTG TGTGTGGTGG GGCTGCTGCG CTCAGTGGGG
AACCCGATTG GTTCGCTGCT GATGGCGAAA GCGCGGGTCG ATATCAGCTT TAAATTCAAC
GTATTCAAAA CCTTTCTGTT TATTCCGGCG ATTGTTATTG GTGGGCAGAT GGCGGGCGCA
ATCGGCGTCA CGCTTGGCTT CCTGCTGGTG CAGATTATCA ACACCATTCT GAGCTATTTC
GTGATGATTA AACCGGTGCT CGGTTCCAGT TATCGCCAGT ACATCCTGAG TTTGTGGCTG
CCGTTTTACC TCTCGCTGCC GACGCTGGGG GTCAGTTATG CGCTGGGCAT TGTGCTGAAA
GGGCAACTGG CGCTGGGGAT GCTGCTGGCG GTGCAAATAG CCGCGGGCGT GCTGGCGTTT
GTGGTGATGA TTGTGCTGTC GCGCCATTCG TTGGTGGTGG AAGTGAAGCG TCAGTTTTGT
CGCAGCGAAA AAATGAAAAT GCTTTTACGG GCGGGGTGA
|
|---|
| Protein sequence | MSLREKTISG AKWSAIATVI IIGLGLVQMT VLARIIDNHQ FGLLTVSLVI IALADTLSDF
GIANSIIQRK EISHLELTTL YWLNVGLGLV VCVAVFLLSD LIGDVLNNPD LAPLIKTLSL
AFVVIPHGQQ FRALMQKELE FNKIGMIETS AVLAGFTFTV VSAHFWPLAM TAILGYLVNS
AVRTLLFGYF GRKIYRPGLH FSLASVAPNL RFGAWLTADS IINYLNTNLS TLVLARILGA
GVAGGYNLAY NVAVVPPMKL NPIITRVLFP AFAKIQDDTE KLRVNFYKLL SVVGIINFPA
LLGLMVVSNN FVPLVFGEKW NSIIPVLQLL CVVGLLRSVG NPIGSLLMAK ARVDISFKFN
VFKTFLFIPA IVIGGQMAGA IGVTLGFLLV QIINTILSYF VMIKPVLGSS YRQYILSLWL
PFYLSLPTLG VSYALGIVLK GQLALGMLLA VQIAAGVLAF VVMIVLSRHS LVVEVKRQFC
RSEKMKMLLR AG
|
|---|
| |