Gene EcSMS35_0987 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_0987 
Symbol 
ID6143256 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp1001819 
End bp1002478 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content52% 
IMG OID641615874 
Productvon Willebrand factor type A domain-containing protein 
Protein accessionYP_001743066 
Protein GI170679715 
COG category[R] General function prediction only 
COG ID[COG4245] Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value0.233145 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAAC AAATCACGTT TGCCACCAGC GATTTTGCCA GTAACCCGGA ACCACGTTGC 
CCCTGCATTT TGCTGCTGGA TGTTTCTGGT TCTATGAACG GTAGACCCAT TAATGAACTT
AACGCCGGAT TGGTTACCTT TCGCGATGAG CTGCTTGCTG ACCCGCTGGC CTTAAAAAGA
GTGGAACTCG GTATTGTGAC GTTCGGCCCA GTGCATGTGG AACAACCCTT TACCAGCGCC
GCTAATTTTT TCCCGCCCAT CCTGTTTGCC CAGGGCGATA CACCAATGGG CGCTGCCATT
ACCAAAGCCC TGGATATGGT AGAGGAGCGG AAACGTGAGT ATCGTGCAAA TGGTATTTCG
TATTATCGCC CGTGGATTTT CCTGATCACC GATGGCGCTC CAACCGATGA GTGGCAGGCT
GCCGCCAACA AAGTGTTTCA GGGGGAAGAA GATAAGAAGT TTGCCTTCTT TTCCATCGGT
GTTCAGGGGG CGGATATGAA GACTTTGGCA CAAATCAGCG TTCGTCAGCC TTTGCCATTG
CAGGGATTAC AATTCCGTGA ACTGTTTAGC TGGTTATCCA GTTCGCTGCG TTCGGTTTCC
CGCTCCACGC CGGGAACGGA AGTTGTGCTG GAAGCGCCAA AAGGCTGGAC GTCAGTGTGA
 
Protein sequence
MSEQITFATS DFASNPEPRC PCILLLDVSG SMNGRPINEL NAGLVTFRDE LLADPLALKR 
VELGIVTFGP VHVEQPFTSA ANFFPPILFA QGDTPMGAAI TKALDMVEER KREYRANGIS
YYRPWIFLIT DGAPTDEWQA AANKVFQGEE DKKFAFFSIG VQGADMKTLA QISVRQPLPL
QGLQFRELFS WLSSSLRSVS RSTPGTEVVL EAPKGWTSV