| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0985 |
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| Symbol | mdtB |
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| ID | 6144167 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 996561 |
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| End bp | 999683 |
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| Gene Length | 3123 bp |
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| Protein Length | 1040 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641615872 |
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| Product | multidrug efflux system subunit MdtB |
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| Protein accession | YP_001743064 |
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| Protein GI | 170680654 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 0.442979 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGTGT TACCCCCGAG CAGCACAGGC GGCCCGTCGC GCCTGTTTAT TATGCGTCCT
GTCGCCACCA CGCTGCTGAT GGTGGCGATC TTACTCGCCG GGATTATCGG TTATCGCGCC
CTGCCCGTTT CGGCGCTGCC GGAAGTGGAC TATCCAACCA TTCAGGTGGT CACCCTCTAC
CCAGGTGCGA GCCCGGATGT CATGACCTCT GCCGTTACCG CGCCGCTTGA ACGCCAGTTT
GGGCAGATGT CTGGCCTGAA ACAGATGTCG TCGCAAAGTT CCGGCGGTGC GTCAGTTATC
ACTTTGCAGT TCCAGCTAAC ATTACCGCTC GATGTCGCCG AGCAGGAAGT GCAGGCCGCG
ATTAACGCTG CGACCAACTT GTTGCCGAGC GATCTGCCTA ACCCGCCGGT TTACAGCAAA
GTGAACCCGG CAGATCCGCC GATCATGACG CTCGCTGTCA CCTCAACCGC CATGCCGATG
ACGCAAGTGG AAGATATGGT GGAAACCCGC GTCGCGCAAA AAATCTCGCA GATTTCCGGC
GTCGGCCTGG TGACGCTTTC CGGCGGCCAG CGTCCGGCTG TTCGCGTCAA ACTTAACGCC
CAGGCGATTG CCGCCCTCGG CCTGACCAGC GAAACCGTGC GCACCGCTAT TACCGGCGCT
AACGTTAACT CGGCAAAAGG TAGCCTCGAC GGCCCTTCCC GTGCGGTCAC ACTTTCCGCG
AACGACCAGA TGCAATCCGC CGAAGAGTAT CGCCAGCTGA TCATCGCCTA CCAGAACGGC
GCGCCGATTC GTCTGGGCGA TGTCGCAACC GTAGAGCAAG GAGCAGAAAA CAGCTGGCTC
GGCGCGTGGG CGAACAAAGA ACAGGCCATT GTGATGAATG TTCAGCGCCA GCCCGGTGCT
AACATTATCT CCACCGCCGA CAGCATCCGG CAGATGCTGC CACAACTCAC CGAGAGTTTG
CCGAAATCGG TGAAGGTGAC AGTACTTTCT GACCGTACCA CCAATATTCG CGCATCCGTC
GATGATACTC AGTTTGAATT AATGATGGCT ATCGCGCTGG TAGTCATGAT TATCTACCTG
TTTTTGCGCA ATATTCCGGC GACCATTATT CCTGGCGTCG CAGTGCCGCT GTCGTTAATC
GGCACCTTCG CAGTCATGGT GTTTCTCGAT TTTTCGATCA ATAACCTGAC GCTGATGGCA
TTAACTATCG CCACCGGATT CGTGGTCGAT GACGCCATCG TGGTGATCGA GAACATTTCG
CGCTATATCG AAAAAGGCGA AAAACCGCTG GCGGCGGCGC TCAAGGGCGC GGGTGAAATC
GGTTTTACCA TTATCTCGCT GACCTTCTCG CTGATTGCAG TGCTGATCCC GCTACTGTTT
ATGGGCGATA TCGTCGGGCG ACTGTTCCGC GAATTTGCCA TTACTCTGGC AGTCGCGATT
TTGATCTCAG CCGTGGTGTC GCTGACCCTG ACGCCGATGA TGTGCGCACG GATGCTCAGC
CAGGAGTCAC TGCGTAAACA GAACCGCTTC TCCCGTGCCT CGGAGAAAAT GTTCGACAGG
ATAATCGCCG CCTATGGTCG TGGACTGGCG AAAGTGCTGA ATCATCCGTG GCTGACCTTA
AGCGTGGCGC TCAGCACGCT GCTGCTTAGC GTGCTGCTGT GGGTGTTCAT TCCGAAAGGT
TTCTTCCCGG TGCAGGACAA CGGCATTATT CAGGGCACTT TGCAGGCACC GCAATCCAGC
TCCTTTGCCA ATATGGCCCA GCGGCAACGC CAGGTCGCGG ACGTGATTTT GCAGGATCCG
GCAGTGCAAA GTTTGACCTC ATTTGTTGGC GTTGATGGCA CTAACCCGTC GCTGAACAGT
GCACGTTTAC AGATCAATCT CAAACCACTG GATGAACGAG ATGACCGGGT GCAAAAAGTC
ATCGCCCGTC TGCAAACGGC GGTAGATAAA GTGCCGGGCG TCGATCTCTT CCTGCAACCA
ACGCAGGACC TGACTATTGA TACTCAGGTC AGCCGCACCC AGTACCAGTT TACCTTGCAG
GCCACGTCAC TGGATGCGCT CAGTACCTGG GTGCCACAGT TGATGGAAAA ACTCCAGCAG
CTGCCACAGC TTTCTGATGT CTCCAGCGAC TGGCAGGACA AAGGGCTGGT GGCGTATGTC
AATGTTGATC GCGACAGCGC CAGCCGTCTG GGGATCAGCA TGGCGGACGT CGATAACGCC
CTTTACAACG CGTTTGGTCA GCGACTGATT TCCACTATTT ATACTCAGGC CAACCAGTAT
CGCGTGGTGC TGGAGCACAA CACCGAAAAT ACTCCTGGGC TTGCGGCGCT GGATACTATT
CGCCTGACCA GCAGCGACGG CGGCGTGGTG CCGCTAAGCT CAATTGCCAA AATTGAGCAG
CGTTTTGCGC CGCTTTCCAT CAACCATCTG GATCAGTTCC CGGTAACGAC CATCTCCTTT
AACGTGCCGG ATAACTATTC GCTGGGCGAT GCGGTGCAAG CGATTATGGA CACCGAAAAG
ACGCTGAATC TGCCGGTGGA TATCACCACG CAGTTCCAGG GCAGCACCCT CGCCTTCCAG
TCGGCGCTGG GCAGCACGGT CTGGCTGATT GTCGCGGCGG TGGTGGCGAT GTATATCGTG
CTCGGCATTC TGTACGAGAG CTTTATTCAC CCGATCACCA TTCTCTCGAC GCTACCCACG
GCAGGGGTCG GCGCGCTGCT GGCGTTAATG ATTGCCGGTA GCGAACTGGA TGTGATTGCC
ATTATCGGCA TTATTTTGCT GATCGGTATC GTGAAGAAGA ACGCCATCAT GATGATCGAC
TTCGCGCTGG CTGCTGAGCG CGAGCAAGGC ATGTCGCCGC GCGAAGCTAT TTACCAGGCT
TGTCTGTTGC GTTTTCGTCC GATCCTGATG ACCACTCTGG CGGCTCTGCT TGGTGCGCTG
CCGCTGATGT TGAGTACCGG GGTCGGCGCG GAACTACGTC GTCCGTTAGG TATCGGCATG
GTCGGCGGTC TGATAGTCAG CCAGGTGCTG ACGCTGTTTA CCACGCCGGT GATTTATTTG
CTGTTCGACC GCCTGGCATT GTGGACCAAA AGCCGCTTTG CCCGTCATGA AGAGGAGGCG
TAA
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| Protein sequence | MQVLPPSSTG GPSRLFIMRP VATTLLMVAI LLAGIIGYRA LPVSALPEVD YPTIQVVTLY
PGASPDVMTS AVTAPLERQF GQMSGLKQMS SQSSGGASVI TLQFQLTLPL DVAEQEVQAA
INAATNLLPS DLPNPPVYSK VNPADPPIMT LAVTSTAMPM TQVEDMVETR VAQKISQISG
VGLVTLSGGQ RPAVRVKLNA QAIAALGLTS ETVRTAITGA NVNSAKGSLD GPSRAVTLSA
NDQMQSAEEY RQLIIAYQNG APIRLGDVAT VEQGAENSWL GAWANKEQAI VMNVQRQPGA
NIISTADSIR QMLPQLTESL PKSVKVTVLS DRTTNIRASV DDTQFELMMA IALVVMIIYL
FLRNIPATII PGVAVPLSLI GTFAVMVFLD FSINNLTLMA LTIATGFVVD DAIVVIENIS
RYIEKGEKPL AAALKGAGEI GFTIISLTFS LIAVLIPLLF MGDIVGRLFR EFAITLAVAI
LISAVVSLTL TPMMCARMLS QESLRKQNRF SRASEKMFDR IIAAYGRGLA KVLNHPWLTL
SVALSTLLLS VLLWVFIPKG FFPVQDNGII QGTLQAPQSS SFANMAQRQR QVADVILQDP
AVQSLTSFVG VDGTNPSLNS ARLQINLKPL DERDDRVQKV IARLQTAVDK VPGVDLFLQP
TQDLTIDTQV SRTQYQFTLQ ATSLDALSTW VPQLMEKLQQ LPQLSDVSSD WQDKGLVAYV
NVDRDSASRL GISMADVDNA LYNAFGQRLI STIYTQANQY RVVLEHNTEN TPGLAALDTI
RLTSSDGGVV PLSSIAKIEQ RFAPLSINHL DQFPVTTISF NVPDNYSLGD AVQAIMDTEK
TLNLPVDITT QFQGSTLAFQ SALGSTVWLI VAAVVAMYIV LGILYESFIH PITILSTLPT
AGVGALLALM IAGSELDVIA IIGIILLIGI VKKNAIMMID FALAAEREQG MSPREAIYQA
CLLRFRPILM TTLAALLGAL PLMLSTGVGA ELRRPLGIGM VGGLIVSQVL TLFTTPVIYL
LFDRLALWTK SRFARHEEEA
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