| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0974 |
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| Symbol | gatR |
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| ID | 6144532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 984349 |
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| End bp | 985128 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641615861 |
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| Product | galactitol utilization operon repressor |
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| Protein accession | YP_001743053 |
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| Protein GI | 170682006 |
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| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
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| COG ID | [COG1349] Transcriptional regulators of sugar metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 0.430087 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGATGA ATTCATTCGA GCGAAGGAAT AAGATCATCC AATTAGTGAA TGAACAGGGA
ACCGTGCTTG TTCAGGATCT GGCGGGAGTA TTTGCTGCCT CGGAAGCGAC AATCCGTGCC
GATTTGCGCT TTCTCGAACA AAAAGGCGTG GTTACGCGCT TTCATGGCGG TGCGGCGAAA
ATAATGTCCG GTAATAGTGA AACCGAGACC CAGGAAGTCG GGTTTAAAGA GCGATTTCAG
CTCGCCAGCG CGCCAAAAAA CAGAATAGCG CAGGCGGCAG TCAAAATGAT CCACGAAGGG
ATGACCGTTA TTCTCGACAG CGGAAGTACG ACAATGCTTA TCGCCGAAGG ATTAATGACC
GCCAAAAATA TCACGGTGAT TACCAACAGT CTCCCGGCAG CATTTGCCCT TTCCGAAAAT
AAAGACATTA CTCTGGTCGT CTGCGGTGGC ACGGTCCGCC ATAAAACGCG CTCGATGCAT
GGCTCCATTG CTGAGCGTTC ATTGCAGGAT ATTAATGCCG ATTTAATGTT TGTCGGTGCT
GATGGTATTG ATGCGGTTAA TGGTATTACG ACCTTTAATG AAGGCTATTC GATTAGCGGG
GCGATGGTCA CAGCCGCAAA TAAAGTGATT GCCGTTCTCG ATTCATCGAA ATTTAATCGT
CGCGGTTTTA ATCAGGTACT GCCAATCGAA AAAATTGACA TTATTATTAC CGATGATGCT
GTGTCTGAGG TGGATAAACT GGCATTGCAG AAGACACGGG TAAAATTAAT TACGGTGTAG
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| Protein sequence | MTMNSFERRN KIIQLVNEQG TVLVQDLAGV FAASEATIRA DLRFLEQKGV VTRFHGGAAK
IMSGNSETET QEVGFKERFQ LASAPKNRIA QAAVKMIHEG MTVILDSGST TMLIAEGLMT
AKNITVITNS LPAAFALSEN KDITLVVCGG TVRHKTRSMH GSIAERSLQD INADLMFVGA
DGIDAVNGIT TFNEGYSISG AMVTAANKVI AVLDSSKFNR RGFNQVLPIE KIDIIITDDA
VSEVDKLALQ KTRVKLITV
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