Gene EcSMS35_0970 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_0970 
SymbolgatA 
ID6145319 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp981035 
End bp981487 
Gene Length453 bp 
Protein Length150 aa 
Translation table11 
GC content43% 
IMG OID641615857 
ProductPTS system galactitol-specific transporter subunit IIA 
Protein accessionYP_001743049 
Protein GI170680637 
COG category[G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value0.381164 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTAACC TGTTTGTTCG TAGCGGAATT TCTTTTGTCG ATCGTAGCGA AGTTTTAGCC 
CATATCGGTA ATGAGATGCT CGCGAAAGGT GTGGTTCATG ATACCTGGCC ACAGGCATTA
ATTGCCAGAG AAGCAGAATT CCCTACCGGG ATAATGCTTG AGCAGCACGC CATTGCAATA
CCGCATTGTG AGGCGATTCA TGCTAAGTCG TCAGCCATTT ATCTGTTAAG GCCAACAAAT
AAAGTTCATT TTCAGCAAGC GGATGATGAT AACGACGTGG CGGTATCGTT GGTTATTGCG
TTGATTGTGG AAAATCCGCA GCAGCAATTG AAACTTTTAC GCTGTTTATT TGGCAAGTTA
CAACAGCCCG ATATCGTCGA GACACTAATT ACTCTTCCTG AAACTCAGTT AAAGGAATAC
TTCACAAAGT ATGTTTTAGA TTCAGACGAA TAA
 
Protein sequence
MTNLFVRSGI SFVDRSEVLA HIGNEMLAKG VVHDTWPQAL IAREAEFPTG IMLEQHAIAI 
PHCEAIHAKS SAIYLLRPTN KVHFQQADDD NDVAVSLVIA LIVENPQQQL KLLRCLFGKL
QQPDIVETLI TLPETQLKEY FTKYVLDSDE