Gene EcSMS35_0962 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_0962 
Symbol 
ID6145243 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp972512 
End bp973330 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content48% 
IMG OID641615849 
Productglycosy hydrolase family protein 
Protein accessionYP_001743041 
Protein GI170681659 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3757] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCTGA GAATCACCAG TCGAAAAAAA TTCACCGTTT TATTATGCGC TCTTGGGCTA 
ATTTCCATCG TTGCAATTTA TCCGCGTCAG ACGGTGAATT TTTTCTATTC GACAGCAATT
CAGATTAAAG ACTACATCCA CTTCTACGGT TATCGCCCGG TCAAATCTTT TGCTATTCGC
ATTCCTGCCA GTTACACCAT TCATGGTATT GATGTTTCAC GCTGGCAGGA GCGAATCGAC
TGGCAGCGGG TGGCAAAAAT GCGCGATAAC GGTATTCGCT TACAATTTGC CTTTATTAAG
GCGACGGAAG GCGAAAAGCT GGTGGACCCC TATTTTTCGC GTAACTGGCA ACTAAGCCGC
GAAAATGGCC TGCTGCGCGG GGCGTATCAT TATTTCTCCC CGTCGGTATC CGCTTCAGTT
CAGGCGCGAT TATTTCTGCA AACGGTGGAT TTCTCACAAG GCGATTTACC TGCCGTGCTG
GACGTAGAAG AACGGGGAAA ATTATCGGCA AAAGAATTAC GCAAGCGGGT AAGTCAGTGG
CTAAAAATGG TCGAAAAACG CACGGGAAAA AAGCCGATTA TTTACTCAGG AGCCGTTTTT
TATCACACGA ATCTGGCGGG CTATTTCAAT GAATATCCGT GGTGGGTGGC TCACTACTAT
CAACGTCGTC CGGACAATGA CGGCATGGCC TGGCGCTTCT GGCAGCATTC CGACCGTGGG
CAGGTAGATG GCATTAATGG TCCGGTGGAT TTTAATGTGT TTAATGGCAC AGAGGAGGAG
TTGCAGGGAT TCGTTGATGG GATTAAAGAA ACGCCTTAA
 
Protein sequence
MQLRITSRKK FTVLLCALGL ISIVAIYPRQ TVNFFYSTAI QIKDYIHFYG YRPVKSFAIR 
IPASYTIHGI DVSRWQERID WQRVAKMRDN GIRLQFAFIK ATEGEKLVDP YFSRNWQLSR
ENGLLRGAYH YFSPSVSASV QARLFLQTVD FSQGDLPAVL DVEERGKLSA KELRKRVSQW
LKMVEKRTGK KPIIYSGAVF YHTNLAGYFN EYPWWVAHYY QRRPDNDGMA WRFWQHSDRG
QVDGINGPVD FNVFNGTEEE LQGFVDGIKE TP