Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_0897 |
Symbol | amiD |
ID | 6147397 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 899812 |
End bp | 900642 |
Gene Length | 831 bp |
Protein Length | 276 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 641615784 |
Product | N-acetylmuramoyl-L-alanine amidase AmiD |
Protein accession | YP_001742976 |
Protein GI | 170682080 |
COG category | [V] Defense mechanisms |
COG ID | [COG3023] Negative regulator of beta-lactamase expression |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAAGAG TCTTCTGGCT GGTCGCCGCC GCTCTGTTAC TGGCAGGGTG TGCAGGCGAA AAGGGCATTG TCGAGAAAGA GGGATATCAG CTTGATACCC GACGCCAGGC GCAGGCGGCG TATCCGCGCA TTAAAGTGAT GGTTATCCAC TACACCGCAG ATGATTTTGA TAGCTCGCTG GCGACACTGA CCGACAAGCA GGTCAGCTCG CATTATCTGG TCCCTGCGGT GCCACCGCGA TACAACGGTA AACCGCGCAT CTGGCAACTG GTGCCGGAAC AGGAACTGGC CTGGCATGCG GGGATTAGCG CCTGGCGCGG GGCAACGCGC CTTAACGACA CCTCTATTGG CATTGAGCTG GAAAACCGTG GCTGGCAGAA ATCAGCCGGA GTGAAATATT TTGCCCCGTT TGAACCGGCA CAGATTCAGG CGCTTATTCC ACTGGCGAAA GATATTATTG CCCGTTATCA CATCAAGCCG GAAAACGTAG TGGCACATGC GGATATCGCC CCGCAGCGCA AAGACGATCC GGGGCCATTA TTTCCCTGGC AGCAACTGGC GCAGCAGGGG ATTGGTGCCT GGCCGGATGC GCAGCGGGTG AACTTTTACC TTGCCGGGCG CGCGCCGCAC ACACCGGTAG ATACCGCGTC ATTGCTGGAG CTTTTGGCGC GCTACGGTTA TGACGTTAAA CCTGATATGA CACCGCGCGA GCAGCGGCGC GTGATTATGG CGTTCCAGAT GCATTTCCGC CCGACGTTAT ACAACGGCGA AGCGGATGCA GAAACTCAGG CGATTGCCGA AGCGTTGCTG GAGAAATACG GGCAGGATTA G
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Protein sequence | MRRVFWLVAA ALLLAGCAGE KGIVEKEGYQ LDTRRQAQAA YPRIKVMVIH YTADDFDSSL ATLTDKQVSS HYLVPAVPPR YNGKPRIWQL VPEQELAWHA GISAWRGATR LNDTSIGIEL ENRGWQKSAG VKYFAPFEPA QIQALIPLAK DIIARYHIKP ENVVAHADIA PQRKDDPGPL FPWQQLAQQG IGAWPDAQRV NFYLAGRAPH TPVDTASLLE LLARYGYDVK PDMTPREQRR VIMAFQMHFR PTLYNGEADA ETQAIAEALL EKYGQD
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