| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0887 |
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| Symbol | rumB |
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| ID | 6145152 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 891150 |
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| End bp | 892277 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641615775 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_001742967 |
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| Protein GI | 170681470 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.848351 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGTGCG CACTTTACGA CGCGGGTCGC TGTCGTTCCT GTCAGTGGAT AACGCAGCCG
ATTCCAGAGC AACTCTCCGC TAAAACCGCC GATCTTAAAA ATCTGCTCGC CGATTTTCCG
GTTGAGGAAT GGTGTGCGCC GGTGTCAGGC CCGGAACAAG GGTTTCGTAA TAAAGCCAAA
ATGGTGGTGA GTGGTAGTGT TGAAAAACCA CTGCTCGGTA TGCTGCATCG AGATGGTACA
CCGGAAGACC TTTGTGACTG CCCGCTTTAT CCAGCCTCAT TTGCGCCCGT TTTTGCGGCG
CTAAAACCCT TCATCGCCCG TGCGGGGTTA ACACCTTACA ACGTGGCGCG TAAACGTGGT
GAACTGAAAT ACATTCTGCT GACTGAAAGC CAGAGCGATG GCGGCATGAT GCTGCGTTTT
GTACTGCGTT CTGATACCAA ACTGGCGCAA CTGCGTAAGG CGCTGCCGTG GTTACAGGAA
CAATTACCGC AGCTGAAAGT TATTACCGTC AATATTCAGC CGGTACATAT GGCGATTATG
GAAGGGGAGA CGGAGATCTA CCTGACCGAA CAACAGGCGC TGGCGGAGCG TTTTAACGAT
GTGCCGCTGT GGATCCGTCC GCAAAGTTTC TTCCAGACCA ATCCGGCGGT CGCCAGCCAG
CTTTACGCTA CCGCGCGCGA CTGGGTGCGG CAACTACCGG TAAACCATAT GTGGGATCTC
TTCTGCGGCG TGGGGGGCTT TGGTTTACAC TGCGCGACGC CTGACATTCA GTTAACCGGG
ATCGAAATTG CACCAGAGGC CATTGCCTGT GCGAAGCAGT CAGCCGCTGA ACTGGGCTTA
ACGCGTTTGC AATTTCAGGC GCTGGACTCT ACGCAGTTTG CCACCGCCCA GGGGGAAGTG
CCGGAGCTGG TGCTGGTTAA CCCGCCGCGC CGCGGCATTG GTATACCGCT GTGTGATTAT
CTCTCAACGA TGGCACCGCG TTTTATCATA TACTCCAGCT GTAACGCCCA AACCATGGCG
AAAGATATCC GCGAACTGCC AGGTTACCGT ATTGAACGGG TACAGCTTTT TGATATGTTC
CCGCACACCG CGCACTATGA AGTGCTGACG CTGCTGGTGA AGCAATAA
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| Protein sequence | MQCALYDAGR CRSCQWITQP IPEQLSAKTA DLKNLLADFP VEEWCAPVSG PEQGFRNKAK
MVVSGSVEKP LLGMLHRDGT PEDLCDCPLY PASFAPVFAA LKPFIARAGL TPYNVARKRG
ELKYILLTES QSDGGMMLRF VLRSDTKLAQ LRKALPWLQE QLPQLKVITV NIQPVHMAIM
EGETEIYLTE QQALAERFND VPLWIRPQSF FQTNPAVASQ LYATARDWVR QLPVNHMWDL
FCGVGGFGLH CATPDIQLTG IEIAPEAIAC AKQSAAELGL TRLQFQALDS TQFATAQGEV
PELVLVNPPR RGIGIPLCDY LSTMAPRFII YSSCNAQTMA KDIRELPGYR IERVQLFDMF
PHTAHYEVLT LLVKQ
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