| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0717 |
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| Symbol | kdpD |
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| ID | 6147135 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 720966 |
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| End bp | 723650 |
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| Gene Length | 2685 bp |
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| Protein Length | 894 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641615607 |
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| Product | sensor protein KdpD |
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| Protein accession | YP_001742806 |
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| Protein GI | 170682267 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.649763 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.772603 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAACG AACCCTTACG TCCCGACCCC GATCGTCTGC TGGAACAAAC TGCCGCGCCG
CATCGGGGGA AGCTGAAAGT TTTCTTCGGT GCCTGCGCAG GCGTCGGGAA GACCTGGGCG
ATGCTGGCAG AAGCCCAGCG ACTGCGGGCG CAAGGGCTGG ATATTGTGGT TGGCGTGGTA
GAAACCCACG GGCGGAAAGA TACCGCCGCA ATGCTGGAAG GGCTGGCTGT TCTGCCGTTA
AAACGCCAGG CGTACCGTGG GCGGCACATC AGCGAGTTTG ATCTCGATGC CGCCCTCGCC
CGCCGTCCGG CACTGATCTT AATGGACGAA CTGGCGCACA GTAATGCGCC AGGTTCTCGT
CATCCCAAAC GCTGGCAGGA TATTGAAGAA CTGCTGGAAG CTGGCATTGA TGTTTTCACT
ACCGTCAACG TTCAGCATCT GGAAAGTCTG AATGATGTGG TCAGCGGCGT CACCGGAATT
CAGGTACGGG AAACCGTGCC CGATCCTTTT TTTGATGCCG CCGACGACGT AGTACTGGTG
GACTTGCCCC CGGACGATCT GCGCCAGCGA CTGAAAGAAG GCAAAGTCTA TATTGCCGGG
CAGGCGGAGC GCGCCATTGA ACATTTTTTT CGTAAAGGTA ATCTGATCGC CCTGCGCGAA
CTGGCACTGC GCCGTACTGC CGATCGCGTT GATGAGCAAA TGCGCGCCTG GCGGGGGCAT
CCTGGCGAAG AGAAAGTCTG GCACACGCGC GACGCGATCC TTTTATGCAT CGGGCATAAC
ACCGGCAGCG AAAAACTGGT CCGCGCGGCG GCGCGGCTGG CGTCACGGCT GGGAAGCGTC
TGGCACGCGG TGTATGTTGA AACCCCTGCC CTGCACCGCT TACCGGAGAA AAAACGTCGG
GCAATTCTCA GCGCCTTACG TCTGGCGCAG GAGCTGGGCG CAGAGACGGC AACACTTTCT
GATCCAGCGG AAGAGAAAGC GGTAGTGCGT TATGCCCGTG AACATAATCT CGGCAAGATT
ATTCTCGGTC GCCCAGCCTC GCGCCGCTGG TGGCGTCGGG AAACGTTTGC TGACCGACTG
GCGCGAATCG CCCCCGATCT CGATCAGGTG CTGGTCGCGC TTGATGAACC ACCCGCCCGC
ACGATAAACA ACGCGCTGGA TAGCCGCTCT TTTAAAGACA AGTGGCGGGT ACAGATTCAG
GGATGCGTGG TTGCCGCCGC GTTATGCGCC GTTATCACCT TAATTGCCAT GCAGTGGCTG
ATGGCGTTTG ATGCCGCCAA CCTGGTGATG CTGTATCTGC TTGGCGTGGT GATGGTGGCG
CTATTTTATG GACGCTGGCC TTCAGTGGTT GCCACCGTCA TTAATGTGGT GAGTTTCGAT
CTCTTTTTTA TCGCCCCACG CGGCACGCTC GCCGTCTCTG ATGTGCAATA TCTACTGACC
TTCGCGGTGA TGTTAACCGT CGGGCTGGTG ATCGGGAACC TTACTGCGGG CGTGCGTTAT
CAGGCGCGGG TAGCCCGTTA CCGCGAGCAA CGCACACGGC ACTTATATGA AATGTCGAAA
GCTCTGGCTG TGGGCCGCAG TCCGCAGGAC ATCGCCGCCA CCAGCGAACA ATTTATTGCC
TCCACGTTTC ATGCCCGCAG TCAGGTGCTG TTACCCGATG ACAACGGTAA ATTGCAGCCG
TTAACACATC CGCAAGGAAT GACGCCGTGG GACGATGCCA TCGCGCAGTG GAGTTTTGAT
AAAGGCCTGC CTGCGGGCGC GGGCACCGAC ACGTTACCCG GTGTACCGTA CCAGATTTTG
CCGCTAAAAA GCGGCGAGAA AACCTACGGA CTGGTGGTGG TGGAACCGGG GAATCTGCGT
CAATTGATGA TCCCGGAACA GCAGCGCCTG CTGGAGACGT TTACGCTGTT AGTCGCCAAT
GCCCTTGAGC GGCTGACGCT GACCGCCAGC GAAGAACAGG CGCGGATGGC AAGCGAACGA
GAACAGATCC GCAACGCCCT GCTGGCGGCA CTTTCGCATG ATTTACGCAC GCCGCTTACG
GTGCTGTTCG GTCAGGCAGA AATCTTAACG CTCGATCTGG CAAGCGAAGG ATCGCCCCAC
GCCCGCCAGG CCAGCGAGAT TCGCCAGCAT GTGCTGAACA CGACCCGACT GGTGAATAAT
CTACTGGATA TGGCGCGAAT TCAGTCCGGC GGCTTTAATT TGAAGAAAGA GTGGTTAACG
CTGGAAGAAG TGGTCGGCAG CGCGCTGCAA ATGCTGGAAC CGGGTTTATC GTCGCCCATC
AATCTTTCTC TGCCAGAACC GCTGACCTTA ATCCACGTTG ACGGGCCACT GTTTGAACGG
GTGCTGATTA ATCTGCTGGA GAACGCGGTG AAATACGCGG GTGCGCAGGC CGAAATTGGT
ATCGATGCCC ACGTTGAGGG CGAAAATCTA CAACTGGATG TCTGGGATAA TGGCCCCGGT
CTTCCACCAG GCCAGGAGCA GACGATTTTC GATAAGTTTG CTCGTGGAAA TAAAGAGTCG
GCGGTGCCGG GGGTAGGGCT TGGGCTGGCA ATTTGTCGGG CGATTGTGGA TGTACACGGC
GGCACCATTA CCGCGTTCAA CCGACCGGAA GGTGGTGCCT GTTTTCGTGT TACACTTCCC
CAGCAAACTG CCCCTGAACT TGAAGAATTT CATGAGGATA TGTGA
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| Protein sequence | MNNEPLRPDP DRLLEQTAAP HRGKLKVFFG ACAGVGKTWA MLAEAQRLRA QGLDIVVGVV
ETHGRKDTAA MLEGLAVLPL KRQAYRGRHI SEFDLDAALA RRPALILMDE LAHSNAPGSR
HPKRWQDIEE LLEAGIDVFT TVNVQHLESL NDVVSGVTGI QVRETVPDPF FDAADDVVLV
DLPPDDLRQR LKEGKVYIAG QAERAIEHFF RKGNLIALRE LALRRTADRV DEQMRAWRGH
PGEEKVWHTR DAILLCIGHN TGSEKLVRAA ARLASRLGSV WHAVYVETPA LHRLPEKKRR
AILSALRLAQ ELGAETATLS DPAEEKAVVR YAREHNLGKI ILGRPASRRW WRRETFADRL
ARIAPDLDQV LVALDEPPAR TINNALDSRS FKDKWRVQIQ GCVVAAALCA VITLIAMQWL
MAFDAANLVM LYLLGVVMVA LFYGRWPSVV ATVINVVSFD LFFIAPRGTL AVSDVQYLLT
FAVMLTVGLV IGNLTAGVRY QARVARYREQ RTRHLYEMSK ALAVGRSPQD IAATSEQFIA
STFHARSQVL LPDDNGKLQP LTHPQGMTPW DDAIAQWSFD KGLPAGAGTD TLPGVPYQIL
PLKSGEKTYG LVVVEPGNLR QLMIPEQQRL LETFTLLVAN ALERLTLTAS EEQARMASER
EQIRNALLAA LSHDLRTPLT VLFGQAEILT LDLASEGSPH ARQASEIRQH VLNTTRLVNN
LLDMARIQSG GFNLKKEWLT LEEVVGSALQ MLEPGLSSPI NLSLPEPLTL IHVDGPLFER
VLINLLENAV KYAGAQAEIG IDAHVEGENL QLDVWDNGPG LPPGQEQTIF DKFARGNKES
AVPGVGLGLA ICRAIVDVHG GTITAFNRPE GGACFRVTLP QQTAPELEEF HEDM
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