| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0660 |
|---|
| Symbol | holA |
|---|
| ID | 6146832 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 671178 |
|---|
| End bp | 672209 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641615550 |
|---|
| Product | DNA polymerase III subunit delta |
|---|
| Protein accession | YP_001742756 |
|---|
| Protein GI | 170679792 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1466] DNA polymerase III, delta subunit |
|---|
| TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.000888397 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 72 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCGGT TGTACCCGGA ACAACTCCGC GCGCAGCTCA ATGAAGGGCT GCGCGCGGCG
TATCTTTTAC TTGGTAACGA TCCTCTGTTA TTGCAGGAAA GCCAGGACGC TGTTCGTCAG
GTCGCTGCGG CACAAGGATT CGAAGAACAC CACACTTTTT CCATTGATCC CAACACTGAC
TGGAATGCGA TCTTTTCGTT ATGCCAGGCT ATGAGTCTGT TTGCCAGTCG ACAAACGCTA
TTGCTGTTGT TACCAGAAAA CGGACCGAAT GCGGCGATCA ATGAACAACT TCTCACACTC
ACCGGACTTC TGCATGACGA CCTGCTGTTG ATCGTCCGCG GTAATAAATT AAGCAAAGCG
CAAGAAAATG CCGCCTGGTT TACTGCTCTT GCGAATCGCA GCGTGCAGGT GACCTGTCAG
ACACCGGAGC AGGCTCAGCT TCCCCGCTGG GTTGCTGCGC GTGCAAAACA GCTCAACTTA
GAACTGGATG ACGCTGCAAA TCAGGTGCTC TGCTACTGTT ATGAAGGTAA CCTGCTGGCG
CTGGCCCAGG CACTGGAGCG TTTATCGCTG CTCTGGCCAG ACGGCAAACT GACATTACCG
CGCGTTGAAC AGGCGGTGAA TGATGCCGCG CATTTCACCC CTTTTCATTG GGTTGATGCT
TTGTTGATGG GAAAAAGTAA GCGCGCGTTG CATATTCTTC AGCAACTGCG TCTGGAAGGC
AGCGAACCGG TTATTTTGTT GCGCACATTA CAACGTGAAC TGTTGTTACT GGTTAACCTG
AAACGCCAGT CTGCCCATAT GCCACTGCGT GCATTGTTTG ATAAGCATCG GGTATGGCAG
AACCGCCGGG GCATGATGGG CGAGGCGTTA AATCGCTTAA GCCAGCCGCA GTTACGTCAG
GCCGTGCAAC TCCTGACACG AACGGAACTC ACCCTCAAAC AAGATTACGG TCAGTCAGTG
TGGGCAGAGC TGGAAGGGTT ATCTCTTCTG TTGTGCCATA AACCCCTGGC GGACGTATTT
ATCGACGGTT GA
|
|---|
| Protein sequence | MIRLYPEQLR AQLNEGLRAA YLLLGNDPLL LQESQDAVRQ VAAAQGFEEH HTFSIDPNTD
WNAIFSLCQA MSLFASRQTL LLLLPENGPN AAINEQLLTL TGLLHDDLLL IVRGNKLSKA
QENAAWFTAL ANRSVQVTCQ TPEQAQLPRW VAARAKQLNL ELDDAANQVL CYCYEGNLLA
LAQALERLSL LWPDGKLTLP RVEQAVNDAA HFTPFHWVDA LLMGKSKRAL HILQQLRLEG
SEPVILLRTL QRELLLLVNL KRQSAHMPLR ALFDKHRVWQ NRRGMMGEAL NRLSQPQLRQ
AVQLLTRTEL TLKQDYGQSV WAELEGLSLL LCHKPLADVF IDG
|
|---|
| |