| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0650 |
|---|
| Symbol | lipB |
|---|
| ID | 6144143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | - |
|---|
| Start bp | 662240 |
|---|
| End bp | 662881 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641615540 |
|---|
| Product | lipoate-protein ligase B |
|---|
| Protein accession | YP_001742746 |
|---|
| Protein GI | 170683874 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0321] Lipoate-protein ligase B |
|---|
| TIGRFAM ID | [TIGR00214] lipoate-protein ligase B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000116189 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTATCAGG ATAAAATTCT TGTCCGCCAG CTCGGTCTTC AGCCTTACGA GCCAATCTCC
CTGGCTATGC ATGAATTCAC CGATACCCGC GATGAAAGTA CCCTTGATGA AATCTGGCTG
GTCGAGCACT ATCCGGTATT TACCCAAGGG CAGGCAGGAA AAGCGGAGCA CATTTTAATG
CCGGGTGATA TTCCGGTGAT TCAGAGCGAT CGCGGTGGGC AGGTGACTTA TCACGGGCCG
GGGCAACAGG TGATGTATGT GTTGCTTAAC CTGAAACGCC GTAAACTCGG TGTGCGTGAA
CTGGTGACCT TGCTTGAGCA AACAGTGGTG AATACCCTGG CTGAACTGGG TATAGAAGCG
CATCCTCGGG CTGACGCGCC TGGTGTCTAT GTCGGGGAAA AGAAAATTTG CTCACTGGGT
TTACGTATTC GACGCGGTTG TTCATTCCAC GGTCTGGCAT TAAACGTCAA TATGGATCTT
TCACCATTTT TACGTATTAA TCCTTGTGGG TATGCCGGAA TGGAAATGGC TAAAATATCA
CAATGGAAAC CCGAAGCGAC GACTAATAAT ATTGCACCGC GTTTACTGGA AAATATTTTA
GCGCTACTAA ACAATCCTGA CTTCGAATAT ATTACCGCTT AA
|
|---|
| Protein sequence | MYQDKILVRQ LGLQPYEPIS LAMHEFTDTR DESTLDEIWL VEHYPVFTQG QAGKAEHILM
PGDIPVIQSD RGGQVTYHGP GQQVMYVLLN LKRRKLGVRE LVTLLEQTVV NTLAELGIEA
HPRADAPGVY VGEKKICSLG LRIRRGCSFH GLALNVNMDL SPFLRINPCG YAGMEMAKIS
QWKPEATTNN IAPRLLENIL ALLNNPDFEY ITA
|
|---|
| |