| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0577 |
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| Symbol | sfmD |
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| ID | 6147467 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 583602 |
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| End bp | 586211 |
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| Gene Length | 2610 bp |
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| Protein Length | 869 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641615469 |
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| Product | outer membrane usher protein SfmD |
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| Protein accession | YP_001742676 |
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| Protein GI | 170682983 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.5582 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATAC CCACTACTAC GGATATTCCG CAGAGGTATA CCTGGTGTCT GGCCGGAATT
TGTTATTCAT CTCTTGCCAT TTTACCCTCC TTTTTAAGCT ATGCGGAAAG TTATTTCAAC
CCGGCATTTT TATTAGAGAA TGGCACATCC GTTGCTGATT TATCGCGCTT TGAGAGAGGT
AATCATCAAC CTGCGGGCGT GTATCGGGTG GATCTCTGGC GTAATGATGA GTTCATTGGT
TCACAGGATA TCGTATTTGA ATCGACGACA GTAAATACAG GTGATAAATC AGGTGGGTTA
ATGCCTTGTT TTAACCAGGC ACTCCTTGAA CGAATTGGCC TTAATAGCAG TGCATTCCCC
GAGTTAGCCC AGCAGCAAAA TAATAAATGC ATCAATTTAC TGAAAGCTGT ACCTGATGCC
ACAATTAACT TTGATTTTGC AGCGATGCGC CTGAACATCA CTATTCCTCA GATAGCGTTG
TTGAGTAGCG CTCACGGTTA CATTCCGCCT GAAGAGTGGG ATGAAGGTAT TCCTGCTTTA
CTCCTGAATT ATAATTTCAC CGGTAACAGA GGTAATGGTA ACGATAGCTA TTTTTTTAGT
GAACTCAGCG GGATTAATAT TGGCCCGTGG CGTTTACGCA ACAATGGTTC CTGGAACTAT
TTTCGCGGAA ATGGATATCA TTCAGAACAG TGGAATAATA TTGGCACCTG GGTACAGCGC
GCCATTATTC CGCTGAAAAG TGAACTGGTA ATGGGAGACG GTAATACAGG GAGTGATATT
TTCGATGGCG TTGGATTTCG AGGTGTACGG CTTTATTCTT CCGATAATAT GTATCCTGAT
AGCCAGCAGG GGTTTGCTCC AACGGTACGT GGGATTGCCC GTACGGCGGC CCAGCTAACG
ATTCGGCAAA ATGGTTTTAT TATCTATCAA AGCTATGTTT CCCCCGGTGC TTTTGAAATT
ACAGATTTGC ACCCGACATC TTCAAATGGC GATCTGGACG TCACCATCGA CGAGCGCGAT
GGTAATCAGC AGAATTACAC TATTCCGTAT TCAACAGTGC CAATTTTACA ACGCGAAGGG
CGTTTCAAAT TTGACCTGAC GGCGGGCGAT TTTCGTAGCG GTAATAGTCA GCAATCGTCG
CCTTTCTTTT TTCAGGGCAC GGCACTCGGC GGTTTACCAC AGGAATTTAC TGCCTACGGC
GGGACGCAAT TATCTGCAAA TTACACCGCC TTTTTGTTAG GGCTGGGGCG CAACCTCGGG
AACTGGGGCG CAGTGTCGCT GGATGTAACG CATGCGCGCA GTCAGTTAGC CGACGACAGT
CGTCATGAGG GGGATTCCAT TCGCTTCCTC TATGCGAAAT CAATGAACAC TTTCGGCACC
AATTTTCAGT TAATGGGTTA CCGCTATTCG ACACAAGGTT TTTATACCCT TGATGATGTT
GCGTATCGTC GAATGGAGGG GTACGAATAT GATTACGATT ATGACGGTGA GCATCGCGAT
GAACCGATAA TCGTGAATTA CCACAATTTA CGCTTTAGTC GTAAAGACCG TTTGCAGTTA
AATATTTCAC AATCACTTAA TGACTTTGGC TCGCTTTATA TTTCTGGTAC CCATCAAAAA
TACTGGAATA CTTCGGATTC AGATACCTGG TATCAGGTGG GGTATACCAG CAGCTGGGTT
GGCATCAGTT ATTCACTCTC ATTTTCGTGG AATGAATCTG TAGGGATCCC CGATAACGAA
CGTATTGTCG GACTTAATGT TTCAGTGCCT TTCAATGTTC TGACCAAACG TCGCTACACC
CGGGAAAATG CGCTCGACCG CGCTTATGCC TCCTTTAACG CCAACCGTAA CAGCAACGGG
CAAAATAACT GGCTGGCAGG CGTTGGTGGG ACCTTACTGG AAGGCCACAA CCTGAGTTAT
CACGTAAGCC AGGGCGATAC CTCGAATAAT GGGTATACGG GCAGCGCCAC GGCAAACTGG
CAGGCCGCTT ACGGTACGCT GGGGGTCGGG TATAACTACG ACCGCGATCA ACATGACGTT
AACTGGCAGC TGTCTGGCGG TGTGGTCGGG CATGAAAATG GTATAACGCT GAGCCAGCCT
TTAGGGGATA CCAATGTTTT GATTAAAGCG CCAGGCGCAG GAGGTGTACG CATTGAAAAT
CAAACTGGAA TTTTAACCGA CTGGCGCGGC TATGCGGTGA TGCCGTATGC CACGGTTTAT
CGGTATAACC GTATCGCGCT TGATACCAAT ACGATGGGGA ACTCCATCGA TGTTGAAAAA
AATATTAGCA GCGTTGTGCC GACGCAAGGC GCGTTGGTTC GTGCCAATTT TGATACCCGC
ATAGGCGTGC GGGCGCTCAT TACCGTTACC CAGGGCGGAA AACCGGTGCC GTTTGGATCA
CCGGTACGGG AAAACAGTAC CGGAATAACC AGTATGGTGG GTGATGACGG GCAAGTTTAT
TTAAGCGGTG CGCCATTGTC TGGTGAATTA CTGGTTCAGT GGGGAGACGG CGCGAACTCA
CGCTGCATAG CGCACTATGT ATTGCCGAAG CAAAGCTTAC AGCAAGCCGT CACTGTTATT
TCGGCAGTTT GCACACATCC TGGCTCATAA
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| Protein sequence | MKIPTTTDIP QRYTWCLAGI CYSSLAILPS FLSYAESYFN PAFLLENGTS VADLSRFERG
NHQPAGVYRV DLWRNDEFIG SQDIVFESTT VNTGDKSGGL MPCFNQALLE RIGLNSSAFP
ELAQQQNNKC INLLKAVPDA TINFDFAAMR LNITIPQIAL LSSAHGYIPP EEWDEGIPAL
LLNYNFTGNR GNGNDSYFFS ELSGINIGPW RLRNNGSWNY FRGNGYHSEQ WNNIGTWVQR
AIIPLKSELV MGDGNTGSDI FDGVGFRGVR LYSSDNMYPD SQQGFAPTVR GIARTAAQLT
IRQNGFIIYQ SYVSPGAFEI TDLHPTSSNG DLDVTIDERD GNQQNYTIPY STVPILQREG
RFKFDLTAGD FRSGNSQQSS PFFFQGTALG GLPQEFTAYG GTQLSANYTA FLLGLGRNLG
NWGAVSLDVT HARSQLADDS RHEGDSIRFL YAKSMNTFGT NFQLMGYRYS TQGFYTLDDV
AYRRMEGYEY DYDYDGEHRD EPIIVNYHNL RFSRKDRLQL NISQSLNDFG SLYISGTHQK
YWNTSDSDTW YQVGYTSSWV GISYSLSFSW NESVGIPDNE RIVGLNVSVP FNVLTKRRYT
RENALDRAYA SFNANRNSNG QNNWLAGVGG TLLEGHNLSY HVSQGDTSNN GYTGSATANW
QAAYGTLGVG YNYDRDQHDV NWQLSGGVVG HENGITLSQP LGDTNVLIKA PGAGGVRIEN
QTGILTDWRG YAVMPYATVY RYNRIALDTN TMGNSIDVEK NISSVVPTQG ALVRANFDTR
IGVRALITVT QGGKPVPFGS PVRENSTGIT SMVGDDGQVY LSGAPLSGEL LVQWGDGANS
RCIAHYVLPK QSLQQAVTVI SAVCTHPGS
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