Gene EcSMS35_0538 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagEcSMS35_0538 
Symbol 
ID6145068 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameEscherichia coli SMS-3-5 
KingdomBacteria 
Replicon accessionNC_010498 
Strand
Start bp545098 
End bp546015 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content53% 
IMG OID641615432 
ProductSPFH domain-containing protein/band 7 family protein 
Protein accessionYP_001742639 
Protein GI170681599 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTATCT TTATCCCTAT TCTCATTTTT GTCGCGCTGG TCATTGTCGG CGCGGGCGTC 
AAAATCGTGC CGCAGGGCTA TCAATGGACG GTAGAGCGTT TTGGTCGCTA TACCAAAACG
TTACAGCCAG GTCTAAGCCT AGTGGTGCCC TTTATGGATC GCATTGGTCG CAAGATCAAT
ATGATGGAGC AAGTGCTCGA CATCCCTTCC CAGGAAGTTA TCTCGAAAGA TAACGCCAAC
GTTACCATCG ACGCCGTGTG CTTTATTCAG GTGATTGATG CCCCGCGCGC CGCTTATGAA
GTCAGCAATC TGGAGCTGGC GATCATCAAC CTGACCATGA CTAACATCCG TACCGTGCTG
GGTTCAATGG AACTTGATGA AATGCTCTCT CAGCGCGACA GCATCAACTC ACGCCTGCTG
CGTATTGTCG ATGAGGCCAC CAACCCGTGG GGGATTAAAG TCACCCGTAT TGAAATTCGC
GACGTGCGCC CACCGGCAGA GCTTATCTCT TCAATGAACG CGCAGATGAA AGCGGAACGT
ACCAAACGCG CTTACATCCT TGAAGCGGAA GGGATCCGTC AGGCGGAAAT CCTCAAAGCC
GAAGGTGAAA AACAGTCGCA AATCCTGAAA GCGGAAGGTG AACGTCAGTC GGCATTCTTA
CAGGCCGAAG CGCGTGAACG TTCTGCCGAA GCGGAAGCCC GCGCCACCAA AATGGTGTCT
GAAGCCATTG CCTCCGGCGA TATTCAGGCG GTGAACTACT TCGTCGCACA GAAATACACC
GAAGCGTTAC AGCAGATCGG TTCCTCCAGT AACAGCAAAG TAGTGATGAT GCCATTAGAG
GCCAGCAGCC TGATGGGGTC GATTGCCGGG ATTGCCGAGC TGGTGAAAGA CAGCGCCAAC
AAACGGACTC AGCCATGA
 
Protein sequence
MLIFIPILIF VALVIVGAGV KIVPQGYQWT VERFGRYTKT LQPGLSLVVP FMDRIGRKIN 
MMEQVLDIPS QEVISKDNAN VTIDAVCFIQ VIDAPRAAYE VSNLELAIIN LTMTNIRTVL
GSMELDEMLS QRDSINSRLL RIVDEATNPW GIKVTRIEIR DVRPPAELIS SMNAQMKAER
TKRAYILEAE GIRQAEILKA EGEKQSQILK AEGERQSAFL QAEARERSAE AEARATKMVS
EAIASGDIQA VNYFVAQKYT EALQQIGSSS NSKVVMMPLE ASSLMGSIAG IAELVKDSAN
KRTQP