| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0456 |
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| Symbol | dxs |
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| ID | 6146939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 464346 |
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| End bp | 466208 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641615350 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001742557 |
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| Protein GI | 170680644 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 0.927308 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTG ATATTGCCAA ATACCCGACC CTGGCACTGG TCGACTCCAC CCAGGAGTTA
CGACTGTTGC CGAAAGAGAG TTTACCGAAA CTCTGCGACG AACTGCGCCG CTATTTACTC
GACAGCGTGA GCCGTTCCAG CGGGCACTTC GCCTCCGGGC TGGGCACGGT CGAACTGACC
GTGGCGCTGC ACTATGTCTA CAATACCCCG TTTGACCAGT TAATCTGGGA TGTGGGGCAT
CAGGCTTATC CGCATAAAAT TTTGACCGGA CGCCGCGACA AAATCGGCAC CATCCGTCAG
AAAGGCGGCC TGCACCCGTT CCCGTGGCGC GGCGAAAGCG AATATGACGT ATTAAGCGTC
GGGCATTCAT CAACCTCCAT CAGTGCCGGA ATTGGTATTG CGGTTGCTGC CGAGAAAGAA
GGCAAAAATC GCCGTACCGT CTGTGTCATT GGCGATGGCG CGATTACCGC TGGCATGGCG
TTTGAAGCGA TGAATCACGC GGGCGATATC CGTCCTGATA TGCTGGTGGT TCTCAACGAC
AATGAAATGT CGATTTCCGA AAATGTTGGC GCGCTCAACA ACCATCTGGC GCAACTGCTT
TCCGGTAAGC TTTACTCTTC ACTGCGCGAA GGCGGGAAAA AAGTTTTCTC TGGCGTTCCG
CCCATTAAAG AGCTGCTCAA ACGTACCGAA GAACATATTA AAGGCATGGT AGTGCCTGGC
ACGTTGTTTG AAGAGCTGGG CTTTAACTAC ATCGGCCCGG TGGACGGTCA CGATGTGCTG
GGGCTTATCA CCACGCTGAA GAACATGCGC GACCTGAAAG GCCCGCAGTT CCTGCATATC
ATGACCAAAA AAGGTCGTGG TTATGAACCG GCAGAAAAAG ACCCAATCAC TTTCCACGCC
GTGCCTAAAT TTGATCCCTC CAGCGGTTGT TTGCCGAAAA GTAGCGGCGG TTTGCCGAGC
TATTCAAAAA TCTTTGGCGA CTGGTTGTGC GAAACGGCAG CGAAAGACAA CAAGCTGATG
GCGATTACTC CGGCGATGCG CGAAGGTTCT GGCATGGTCG AGTTTTCACG TAAATTCCCG
GATCGCTACT TCGACGTGGC AATCGCCGAG CAACACGCAG TGACCTTTGC TGCGGGTCTG
GCGATTGGTG GCTACAAACC CATTGTCGCG ATCTACTCCA CTTTCCTGCA ACGCGCCTAT
GATCAGGTGC TGCATGACGT GGCGATACAA AAACTCCCGG TTCTGTTCGC CATTGACCGC
GCGGGCATTG TTGGTGCTGA CGGTCAAACC CACCAGGGCG CTTTTGATCT CTCTTACCTG
CGCTGCATAC CGGAAATGGT CATTATGACC CCGAGCGATG AAAACGAATG TCGCCAGATG
CTCTATACCG GCTATCACTA TAACGATGGC CCGTCAGCGG TACGCTACCC GCGTGGCAAC
GCGGTTGGCG TGGAACTGAC GCCGCTGGAA AAACTGCCAA TTGGCAAAGG CATTGTGAAG
CGTCGTGGCG AGAAACTGGC GATCCTTAAC TTTGGTACGC TGATGCCAGA AGCGGCGAAA
GTCGCTGAAT CGCTGAACGC TACGCTGGTC GATATGCGTT TTGTGAAACC GCTTGATGAA
GCGTTAATTC TGGAAATAGC CGCCAGCCAT GAAGCGCTGG TCACCGTAGA AGAAAACGCC
ATTATGGGCG GCGCAGGCAG CGGAGTGAAC GAAGTGCTGA TGGCCCATCG TAAACCAGTA
CCCGTGCTGA ACATTGGCCT GCCTGACTTC TTTATTCCAC AAGGAACACA GGAAGAAATG
CGCGCCGAAC TCGGCCTCGA TGCCGCCGGT ATGGAAGCCA AAATCAAGGC CTGGCTGGCA
TAA
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| Protein sequence | MSFDIAKYPT LALVDSTQEL RLLPKESLPK LCDELRRYLL DSVSRSSGHF ASGLGTVELT
VALHYVYNTP FDQLIWDVGH QAYPHKILTG RRDKIGTIRQ KGGLHPFPWR GESEYDVLSV
GHSSTSISAG IGIAVAAEKE GKNRRTVCVI GDGAITAGMA FEAMNHAGDI RPDMLVVLND
NEMSISENVG ALNNHLAQLL SGKLYSSLRE GGKKVFSGVP PIKELLKRTE EHIKGMVVPG
TLFEELGFNY IGPVDGHDVL GLITTLKNMR DLKGPQFLHI MTKKGRGYEP AEKDPITFHA
VPKFDPSSGC LPKSSGGLPS YSKIFGDWLC ETAAKDNKLM AITPAMREGS GMVEFSRKFP
DRYFDVAIAE QHAVTFAAGL AIGGYKPIVA IYSTFLQRAY DQVLHDVAIQ KLPVLFAIDR
AGIVGADGQT HQGAFDLSYL RCIPEMVIMT PSDENECRQM LYTGYHYNDG PSAVRYPRGN
AVGVELTPLE KLPIGKGIVK RRGEKLAILN FGTLMPEAAK VAESLNATLV DMRFVKPLDE
ALILEIAASH EALVTVEENA IMGGAGSGVN EVLMAHRKPV PVLNIGLPDF FIPQGTQEEM
RAELGLDAAG MEAKIKAWLA
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