| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0365 |
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| Symbol | prpD |
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| ID | 6145052 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 375744 |
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| End bp | 377195 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641615261 |
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| Product | 2-methylcitrate dehydratase |
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| Protein accession | YP_001742468 |
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| Protein GI | 170681387 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2079] Uncharacterized protein involved in propionate catabolism |
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| TIGRFAM ID | [TIGR02330] 2-methylcitrate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.756913 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGCTC AAATCAACAA CATCCGCCCG GAATTTGATC GTGAAATCGT TGATATCGTC
GATTACGTGA TGAACTACGA AATCAGCTCC AGAGTAGCCT ACGACACTGC ACATTACTGC
CTGCTCGACA CGCTCGGCTG CGGTCTTGAA GCTCTCGAAT ACCCAGCCTG TAAAAAACTG
CTGGGGCCAA TTGTCCCCGG CACCGTCGTA CCTAACGGCG TGCGCGTCCC CGGAACTCAG
TTCCAGCTCG ACCCCGTCCA GGCGGCATTT AACATCGGCG CGATGATCCG TTGGCTCGAT
TTCAACGATA CCTGGCTGGC GGCGGAGTGG GGCCATCCTT CCGACAACCT CGGCGGCATT
CTGGCAACGG CGGACTGGCT TTCGCGCAAC GCGGTCGCCA GCGGCAAAGC GCCGTTGACC
ATGAAACAGG TGCTGACCGC AATGATTAAA GCCCATGAAA TTCAGGGCTG CATCGCGCTG
GAAAACTCCT TTAATCGCGT CGGCCTTGAC CACGTTCTGT TAGTGAAAGT GGCTTCCACC
GCCGTGGTCG CCGAAATGCT TGGCCTGACC CGTGATGAAA TCCTCAACGC TGTTTCGCTG
GCGTGGGTGG ACGGTCAGTC GCTGCGCACC TATCGCCATG CGCCGAACAC CGGCACGCGT
AAATCCTGGG CGGCGGGCGA TGCCACGTCC CGCGCGGTAC GTCTGGCACT GATGGCGAAA
ACGGGCGAAA TGGGCTACCC GTCAGCCCTG ACTGCGCCTG TGTGGGGTTT CTACGACGTC
TCCTTTAAAG GTGAATCGTT CCGCTTCCAG CGCCCGTACG GTTCTTACGT CATGGAGAAT
GTGCTGTTCA AAATCTCCTT CCCGGCGGAG TTCCACTCCC AGACGGCAGT TGAAGCGGCG
ATGACGCTCT ATGAACAGAT GCAGGCAGCA GGCAAAACGG CGGCGGATAT CGAAAAAGTG
ACCATTCGCA CCCACGAAGC CTGTATTCGC ATCATCGACA AAAAAGGGCC GCTCAATAAC
CCGGCTGACC GCGACCACTG CATTCAGTAC ATGGTGGCGA TCCCGCTGCT GTTCGGGCGC
TTAACGGCGG CAGATTACGA GGACAACGTT GCGCAAGATA AACGCATCGA CGCCCTGCGC
GAGAAGATCA ATTGCTTTGA AGATCCGGCG TTTACCGCTG ACTACCACGA CCCGGAAAAA
CGCGCCATCG CCAATGCCAT AACCCTTGAG TTCACCGACG GCACGCGCTT TGAAGAAGAG
GTGGTGGAGT ACCCAATTGG TCATGCTCGC CGCCGTCAGG ATGGAATTCC GAAGCTGGTC
GATAAATTCA AAATCAATCT CGCGCGCCAG TTCCCGACTC GCCAACAGCA GCGCATTCTG
GAGGTTTCTC TCGACAGAGC TCGCCTGGAA CAGATGCCGG TCAATGAGTA TCTCGACCTG
TACGTCATTT AA
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| Protein sequence | MSAQINNIRP EFDREIVDIV DYVMNYEISS RVAYDTAHYC LLDTLGCGLE ALEYPACKKL
LGPIVPGTVV PNGVRVPGTQ FQLDPVQAAF NIGAMIRWLD FNDTWLAAEW GHPSDNLGGI
LATADWLSRN AVASGKAPLT MKQVLTAMIK AHEIQGCIAL ENSFNRVGLD HVLLVKVAST
AVVAEMLGLT RDEILNAVSL AWVDGQSLRT YRHAPNTGTR KSWAAGDATS RAVRLALMAK
TGEMGYPSAL TAPVWGFYDV SFKGESFRFQ RPYGSYVMEN VLFKISFPAE FHSQTAVEAA
MTLYEQMQAA GKTAADIEKV TIRTHEACIR IIDKKGPLNN PADRDHCIQY MVAIPLLFGR
LTAADYEDNV AQDKRIDALR EKINCFEDPA FTADYHDPEK RAIANAITLE FTDGTRFEEE
VVEYPIGHAR RRQDGIPKLV DKFKINLARQ FPTRQQQRIL EVSLDRARLE QMPVNEYLDL
YVI
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