| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0363 |
|---|
| Symbol | prpB |
|---|
| ID | 6143411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli SMS-3-5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010498 |
|---|
| Strand | + |
|---|
| Start bp | 373606 |
|---|
| End bp | 374496 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641615259 |
|---|
| Product | 2-methylisocitrate lyase |
|---|
| Protein accession | YP_001742466 |
|---|
| Protein GI | 170679897 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
|---|
| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCTAC ACTCTCCAGG TAAAGCGTTT CGCGCTGCAC TTAGCAAAGA AACCCCGTTG
CAAATTGTTG GCACCATCAA CGCTAACCAT GCGCTGCTGG CGCAGCGTGC CGGATATCAG
GCGATTTATC TCTCCGGCGG TGGCGTGGCG GCAGGATCGC TGGGGCTGCC CGATCTCGGT
ATTTCTACTC TTGATGATGT GCTGACTGAC ATTCGCCGTA TTACCGACGT TTGTTCGCTG
CCGCTGCTGG TGGATGCGGA TATCGGTTTT GGTTCTTCGG CCTTTAACGT GGCGCGCACC
GTGAAATCGA TGATTAAAGC CGGTGCGGCA GGATTGCATA TTGAAGATCA GGTTGGTGCG
AAACGCTGCG GTCATCGTCC GAACAAAGCG ATCGTCTCGA AAGAGGAGAT GGTGGATCGG
ATCCGCGCGG CGGTGGATGC GAAAACCGAT CCTGATTTTG TGATCATGGC GCGCACCGAT
GCGCTGGCGG TAGAGGGGCT GGACGCCGCG ATCGAGCGCG CGCAGGCCTA TGTTGAAGCG
GGTGCCGAGA TGTTGTTCCC GGAGGCGATT ACCGAACTCG CCATGTACCG CCAGTTTGCT
GATGCGGTGC AGGTGCCAAT CCTCGCCAAC ATTACCGAAT TTGGCGCAAC ACCGCTGTTT
ACCACCGACG AATTACGCAG CGCCCATGTC GCAATGGCGC TGTACCCACT TTCAGCGTTC
CGTGCCATGA ACCGCGCCGC CGAACATGTC TACAACGTCC TGCGTCAGGA AGGCACGCAG
AAAAGCGTCA TCGACACCAT GCAGACCCGC AACGAGCTGT ACGAAAGCAT CAACTACTAC
CAGTACGAAG AGAAGCTCGA CGACCTGTTT GCCCGTAACC AGGCGAAATA A
|
|---|
| Protein sequence | MSLHSPGKAF RAALSKETPL QIVGTINANH ALLAQRAGYQ AIYLSGGGVA AGSLGLPDLG
ISTLDDVLTD IRRITDVCSL PLLVDADIGF GSSAFNVART VKSMIKAGAA GLHIEDQVGA
KRCGHRPNKA IVSKEEMVDR IRAAVDAKTD PDFVIMARTD ALAVEGLDAA IERAQAYVEA
GAEMLFPEAI TELAMYRQFA DAVQVPILAN ITEFGATPLF TTDELRSAHV AMALYPLSAF
RAMNRAAEHV YNVLRQEGTQ KSVIDTMQTR NELYESINYY QYEEKLDDLF ARNQAK
|
|---|
| |