| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0345 |
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| Symbol | betT |
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| ID | 6144703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | + |
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| Start bp | 354709 |
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| End bp | 356742 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641615241 |
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| Product | choline transport protein BetT |
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| Protein accession | YP_001742449 |
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| Protein GI | 170680230 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGACC TTTCACACAG CAGGGAAAAG GACAAAATCA ATCCGGTGGT GTTTTACACT
TCCGCCGGAC TGATTTTGTT GTTTTCCCTG ACAACGATCC TGTTTCGCGA CTTCTCGGCC
CTGTGGATTG GACGCACGCT GGACTGGGTC TCTAAAACCT TCGGTTGGTA CTATCTGCTG
GCGGCAACGC TCTATATTGT CTTTGTGGTC TGCATCGCTT GTTCGCGTTT TGGTTCGGTG
AAGCTCGGGC CAGAACAATC AAAACCGGAA TTCAGTCTGC TGAGTTGGGC GGCGATGCTG
TTTGCTGCCG GGATCGGTAT CGACCTGATG TTCTTCTCCG TAGCCGAACC GGTAACGCAG
TATATGCAGC CGCCGGAAGG CGCGGGTCAG ACGATTGAGG CCGCGCGTCA GGCGATGGTC
TGGACGCTGT TTCACTACGG CTTAACCGGC TGGTCGATGT ATGCGCTGAT GGGCATGGCG
CTCGGATACT TTAGTTATCG TTATAATTTG CCGCTCACCA TCCGCTCGGC GCTGTACCCG
ATCTTCGGTA AACGGATTAA CGGGCCGATA GGTCACTCAG TGGATATTGC AGCGGTGATC
GGCACCATCT TCGGTATTGC CACTACGCTC GGTATCGGTG TGGTGCAGCT TAACTATGGC
TTGAGCGTAC TGTTTGATAT TCCCGATTCA ATGGCGGCGA AAGCGGCACT GATCGCCTTG
TCGGTGATCA TCGCCACGAT CTCTGTCACC TCCGGTGTCG ATAAGGGGAT TCGTGTGTTA
TCGGAACTTA ACGTTGCGCT GGCGCTGGGA TTGATCCTTT TCGTGCTGTT TATGGGCGAC
ACCTCGTTCC TGCTTAATGC GCTGGTGCTG AACGTTGGCG ACTATATGAA TCGCTTTATG
GGCATGACGC TCAACAGTTT TGCCTTCGAC CGTCCGGTTG AGTGGATGAA TAACTGGACG
CTCTTCTTCT GGGCATGGTG GGTGGCATGG TCGCCGTTTG TTGGCTTGTT CCTGGCGCGT
ATCTCGCGTG GGCGTACCAT TCGCCAGTTC GTGCTGGGCA CGTTGATTAT TCCGTTTACC
TTCACGCTGT TATGGCTCTC GGTGTTCGGC AATAGCGCGC TGTATGAAAT CATCCACGGC
GGCGCGGCAT TTGCCGAGGA AGCGATGGTC CATCCGGAGC GCGGCTTCTA CAGCCTGCTG
GCGCAGTATC CGGCGTTTAC CTTTAGCGCC TCCGTCGCCA CCATTACTGG CCTGCTGTTT
TATGTGACCT CGGCGGACTC CGGGGCGCTG GTGCTGGGGA ATTTCACCTC GCAGCTTAAA
GATATCAACA GCGACGCCCC CGGCTGGCTG CGCGTCTTCT GGTCGGTGGC GATTGGCCTG
CTGACGCTCG GCATGCTGAT GACCAACGGG ATATCCGCGC TGCAAAACAC CACGGTGATT
ATGGGCCTGC CGTTCAGCTT TGTGATCTTC TTCGTGATGG CGGGGTTGTA TAAATCTCTG
AAGGTAGAAG ATTACCGCCG TGAAAGTGCC AACCGCGATA CCGCACCGCG ACCGCTGGGG
CTTCAGGATC GCCTGAGCTG GAAAAAACGT CTCTCGCGCC TGATGAATTA TCCGGGCACG
CGTTACACTA AACAGATGAT GGAGACGGTC TGTTACCCGG CAATGGAAGA AGTGGCGCAG
GAGTTGCGGT TGCGCGGCGC GTACGTGGAG CTAAAAAGCC TGCCGCCGGA AGAGGGACAA
CAGTTGGGGC ATCTGGATTT GTTGGTGCAT ATGGGCGAAG AGCAAAACTT TGTCTATCAG
ATTTGGCCGC AGCAATATTC GGTGCCGGGC TTTACCTACC GCGCACGTAG CGGTAAATCG
ACCTACTACC GGCTGGAAAC CTTCCTGTTA GAAGGCAGCC AGGGCAACGA CCTGATGGAC
TACAGCAAAG AGCAGGTGAT CACCGATATT CTTGACCAGT ACGAGCGGCA TCTTAACTTT
ATCCATCTCC ATCGTGAAGC GCCGGGCCAT AGCGTGATGT TCCCGGACGC GTGA
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| Protein sequence | MTDLSHSREK DKINPVVFYT SAGLILLFSL TTILFRDFSA LWIGRTLDWV SKTFGWYYLL
AATLYIVFVV CIACSRFGSV KLGPEQSKPE FSLLSWAAML FAAGIGIDLM FFSVAEPVTQ
YMQPPEGAGQ TIEAARQAMV WTLFHYGLTG WSMYALMGMA LGYFSYRYNL PLTIRSALYP
IFGKRINGPI GHSVDIAAVI GTIFGIATTL GIGVVQLNYG LSVLFDIPDS MAAKAALIAL
SVIIATISVT SGVDKGIRVL SELNVALALG LILFVLFMGD TSFLLNALVL NVGDYMNRFM
GMTLNSFAFD RPVEWMNNWT LFFWAWWVAW SPFVGLFLAR ISRGRTIRQF VLGTLIIPFT
FTLLWLSVFG NSALYEIIHG GAAFAEEAMV HPERGFYSLL AQYPAFTFSA SVATITGLLF
YVTSADSGAL VLGNFTSQLK DINSDAPGWL RVFWSVAIGL LTLGMLMTNG ISALQNTTVI
MGLPFSFVIF FVMAGLYKSL KVEDYRRESA NRDTAPRPLG LQDRLSWKKR LSRLMNYPGT
RYTKQMMETV CYPAMEEVAQ ELRLRGAYVE LKSLPPEEGQ QLGHLDLLVH MGEEQNFVYQ
IWPQQYSVPG FTYRARSGKS TYYRLETFLL EGSQGNDLMD YSKEQVITDI LDQYERHLNF
IHLHREAPGH SVMFPDA
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