| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | EcSMS35_0342 |
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| Symbol | betA |
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| ID | 6146020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli SMS-3-5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010498 |
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| Strand | - |
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| Start bp | 350805 |
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| End bp | 352493 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641615238 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001742446 |
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| Protein GI | 170681227 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCAATTTG ACTACATCAT TATTGGTGCC GGCTCAGCCG GCAACGTCCT CGCTACCCGT
CTGACTGAAG ATCCGAACAC AACCGTGCTG CTGCTTGAAG CAGGCGGCCC GGACTATCGC
TTTGACTTCC GCACCCAGAT GCCCGCCGCG CTGGCGTTCC CGCTACAGGG CAAACGCTAC
AACTGGGCCT ATGAGACGGA ACCCGAACCG TTTATGAACA ACCGCCGCAT GGAGTGCGGA
CGCGGCAAAG GTCTGGGCGG TTCATCGCTG ATCAACGGCA TGTGTTACAT CCGTGGTAAC
GCGCTGGATC TCGATAACTG GGCGCAAGAA CCCGGTCTGG AGAACTGGAG CTACCTCGAC
TGTCTGCCCT ACTACCGCAA GGCCGAGACT CGCGACGTGG GCGAGAACGA CTACCACGGC
GGCGACGGCC CGGTGAGCGT CACCACCTCC AAACCCGGCG TCAATCCGCT GTTTGAAGCG
ATGATTGAAG CGGGCGTGCA GGCGGGCTAC CCGCGCACGG ACGATCTCAA CGGCTATCAG
CAAGAAGGTT TTGGCCCGAT GGATCGCACC GTCACGCCGC ATGGCCGTCG CGCCAGCACC
GCGCGTGGCT ATCTCGATCA GGCCAAATCG CGCTCTAACC TGACCATTCG TACTCACGCC
ATGACCGATC ACATCATTTT TGACGGCAAA CGCGCGGTGG GCGTCGAGTG GCTGGAAGGC
GACAGCACCA TTCCGACCCG CGCGGCGGCG AATAAAGAAG TGCTGTTATG TGCAGGCGCG
ATTGCTTCAC CGCAGATCCT GCAACGCTCC GGCGTCGGCA ACGCTGGACT GCTGGCGGAG
TTTGATATTC CGCTGGTGCA TGAATTACCT GGCGTCGGCG AAAATCTTCA GGATCACCTG
GAGATGTATC TGCAATATGA GTGCAAAGAA CCGGTTTCCC TCTACCCTGC CCTGCAGTGG
TGGAATCAGC CGAAAATCGG TGCGGAGTGG CTGTTTGGCG GCACCGGCAT TGGTGCCAGC
AACCACTTTG AAGCAGGCGG ATTTATTCGC AGCCGTGAGG AATTTGCGTG GCCGAATATT
CAGTACCATT TCCTGCCAGT GGCGATTAAC TATAACGGCT CGAACGCAGT GAAAGAGCAC
GGCTTCCAGT GCCACGTCGG ATCGATGCGC TCGCCAAGCC GTGGGCATGT GCGGATTAAA
TCCCGCGCCC CGCACCAGCA TCCAGCGATT CTGTTTAACT ACATGTCGCA CGAGCAGGAC
TGGCAGGAGT TCCGCGACGC AATTCGCATC ACCCGGGAGA TCATGCATCA ACCGGCGCTG
GATCAGTATC ATGGCCGCGA AATCAGCCCC GGTGTCGAAT GCCAGACGGA TGAGCAGCTC
GATGAGTTTG TGCGTAATCA CGCCGAAACC GCCTTCCACC CATGCGGTAC GTGCAAAATG
GGGTACGACG AGATGTCCGT TGTGGATGGC GAAGGCCGCG TGCACGGGCT GGAAGGATTA
CGCGTAGTCG ATGCGTCAAT TATGCCGCAG ATTATCACCG GCAATCTGAA CGCCACGACG
ATTATGATTG GCGAGAAAAT GGCGGATATG ATTCGCGGGA AGGATGCGTT GCCGAGGAGC
ACGGCGGGAT ATTATGTGGC AAATGGGATG CCGGTGAGAG CGAAAAAAAT GAGTCGTGAT
GTGAACTGA
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| Protein sequence | MQFDYIIIGA GSAGNVLATR LTEDPNTTVL LLEAGGPDYR FDFRTQMPAA LAFPLQGKRY
NWAYETEPEP FMNNRRMECG RGKGLGGSSL INGMCYIRGN ALDLDNWAQE PGLENWSYLD
CLPYYRKAET RDVGENDYHG GDGPVSVTTS KPGVNPLFEA MIEAGVQAGY PRTDDLNGYQ
QEGFGPMDRT VTPHGRRAST ARGYLDQAKS RSNLTIRTHA MTDHIIFDGK RAVGVEWLEG
DSTIPTRAAA NKEVLLCAGA IASPQILQRS GVGNAGLLAE FDIPLVHELP GVGENLQDHL
EMYLQYECKE PVSLYPALQW WNQPKIGAEW LFGGTGIGAS NHFEAGGFIR SREEFAWPNI
QYHFLPVAIN YNGSNAVKEH GFQCHVGSMR SPSRGHVRIK SRAPHQHPAI LFNYMSHEQD
WQEFRDAIRI TREIMHQPAL DQYHGREISP GVECQTDEQL DEFVRNHAET AFHPCGTCKM
GYDEMSVVDG EGRVHGLEGL RVVDASIMPQ IITGNLNATT IMIGEKMADM IRGKDALPRS
TAGYYVANGM PVRAKKMSRD VN
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